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News: List of Deprecated Packages for Bioc3.19
Release Devel ExperimentData Software
7 weeks ago • updated 1 day ago shepherl 3.8k
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News: Important Release 3.18 Freeze Announcment
Release release Bioconductor Bioconducto
13 days ago shepherl 3.8k
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News: Bioconductor 3.19 Release Schedule
Release release Software
7 weeks ago • updated 4 weeks ago shepherl 3.8k
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Rcpp compilation error
Release Rcpp
updated 6 weeks ago by ★ 4.0k • written 6 weeks ago by ▴ 40
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News: Note about packages submitted for Bioconductor 3.19
Release Submission release Bioconductor
12 weeks ago shepherl 3.8k
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News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 6 months ago by 3.8k
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rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene Bioconductor3.18 DifferentialExpression release
updated 5 months ago by 41k • written 5 months ago by ▴ 60
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News: Important Bioconductor Release 3.18 deadlines this week
Release Devel release devel
updated 6 months ago by ★ 3.9k • written 6 months ago by 3.8k
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News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
7 months ago kayla.interdonato ▴ 160
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News: Bioconductor 3.18 Release Schedule
Release Software release
7 months ago shepherl 3.8k
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News: Final List of Deprecated Package Bioc 3.9
deprecation release software experimentData News
written 5.1 years ago by 3.8k
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News: Bioconductor 3.17 is Released!
Packages Release Bioconductor Software
12 months ago shepherl 3.8k
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News: Final List of Deprecated Packages for Bioc3.7
deprecate package release News
written 6.1 years ago by 3.8k
13 results • Page 1 of 1
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Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions by JKim • 0
cross post: https://www.biostars.org/p/9593486/
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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