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News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
7 weeks ago • updated 6 days ago
shepherl
3.8k
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News:
Important Release 3.18 Freeze Announcment
Release
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Bioconductor
Bioconducto
7 days ago
shepherl
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News:
Bioconductor 3.19 Release Schedule
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release
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6 weeks ago • updated 24 days ago
shepherl
3.8k
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Rcpp compilation error
Release
Rcpp
updated 6 weeks ago by
ATpoint
★ 4.0k • written 6 weeks ago by
Robert K. Bradley
▴ 40
0
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186
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News:
Note about packages submitted for Bioconductor 3.19
Release
Submission
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Bioconductor
11 weeks ago
shepherl
3.8k
5
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News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
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written 5 months ago by
shepherl
3.8k
1
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4
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524
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rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene
Bioconductor3.18
DifferentialExpression
release
updated 5 months ago by
Michael Love
41k • written 5 months ago by
Nadine
▴ 60
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4
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686
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News:
Important Bioconductor Release 3.18 deadlines this week
Release
Devel
release
devel
updated 6 months ago by
Guido Hooiveld
★ 3.9k • written 6 months ago by
shepherl
3.8k
1
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360
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News:
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0
release
Annotation
6 months ago
kayla.interdonato
▴ 160
0
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392
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News:
Bioconductor 3.18 Release Schedule
Release
Software
release
7 months ago
shepherl
3.8k
1
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8
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1.5k
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News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 5.1 years ago by
shepherl
3.8k
0
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0
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News:
Bioconductor 3.17 is Released!
Packages
Release
Bioconductor
Software
11 months ago
shepherl
3.8k
0
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2
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1.1k
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News:
Final List of Deprecated Packages for Bioc3.7
deprecate
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release
News
written 6.0 years ago by
shepherl
3.8k
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Answer: Error retrieving ensembl gene id using biomaRt...
by
James W. MacDonald
65k
I can't reproduce. ``` > library(biomaRt) Warning message: package 'biomaRt' was built under R version 4.3.2 > library(org.Hs.eg.db…
Comment: DESeq2 setting significant p-value
by
Michael Love
41k
``` > counts <- matrix(1:16, ncol=4, dimnames=list(letters[1:4],NULL)) > coldata <- data.frame(x=1:4) > DESeqDataSetFromMatrix(counts, cold…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
Right, I was suggesting subsetting as a valid choice for "treatment and control samples at each timepoint"
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…
Comment: DESeq2 setting significant p-value
by
Dev
• 0
Sir but when I put in the expression data via the csv file, it was showing the gene names then but now when i set it in the form factor it …
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Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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