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0
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7
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News: List of Deprecated Packages for Bioc3.19
Release Devel ExperimentData Software
7 weeks ago • updated 1 day ago shepherl 3.8k
0
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0
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70
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News: Important Release 3.18 Freeze Announcment
Release release Bioconductor Bioconducto
13 days ago shepherl 3.8k
0
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1
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237
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News: Bioconductor 3.19 Release Schedule
Release release Software
7 weeks ago • updated 29 days ago shepherl 3.8k
0
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1
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195
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Rcpp compilation error
Release Rcpp
updated 6 weeks ago by ★ 4.0k • written 6 weeks ago by ▴ 40
0
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0
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196
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News: Note about packages submitted for Bioconductor 3.19
Release Submission release Bioconductor
12 weeks ago shepherl 3.8k
5
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1
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420
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News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 6 months ago by 3.8k
1
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4
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539
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rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene Bioconductor3.18 DifferentialExpression release
updated 5 months ago by 41k • written 5 months ago by ▴ 60
0
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4
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701
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News: Important Bioconductor Release 3.18 deadlines this week
Release Devel release devel
updated 6 months ago by ★ 3.9k • written 6 months ago by 3.8k
1
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0
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368
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News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
7 months ago kayla.interdonato ▴ 160
0
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0
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404
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News: Bioconductor 3.18 Release Schedule
Release Software release
7 months ago shepherl 3.8k
1
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8
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1.5k
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News: Final List of Deprecated Package Bioc 3.9
deprecation release software experimentData News
written 5.1 years ago by 3.8k
0
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0
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585
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News: Bioconductor 3.17 is Released!
Packages Release Bioconductor Software
12 months ago shepherl 3.8k
0
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0
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476
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News: Bioconductor Release 3.16 Code Freeze
release Release Bioconductor
12 months ago shepherl 3.8k
0
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0
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633
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News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
13 months ago kayla.interdonato ▴ 160
0
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0
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545
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News: Bioconductor 3.17 Release Schedule
Softwar Release Bioconductor release Software
13 months ago shepherl 3.8k
1
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0
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783
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News: Bioconductor 3.16 is Released!
Release Packages Bioconductor Software
17 months ago shepherl 3.8k
0
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0
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554
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News: Last day to make commits before Release 3.16
Release Devel Bioconductor release devel
18 months ago shepherl 3.8k
0
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2
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738
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News: List of Deprecated Packages for Bioc3.16
Release Deprecation Devel Bioconductor
18 months ago shepherl 3.8k
0
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0
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706
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News: New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release Devel Bioconductor Software
18 months ago shepherl 3.8k
0
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0
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623
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News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
19 months ago kayla.interdonato ▴ 160
4
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0
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647
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News: Bioconductor Release 3.16 Schedule
Release Devel packages release devel
19 months ago shepherl 3.8k
8
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0
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844
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News: Bioconductor 3.15 is Released!
Software Release Packages Bioconductor
24 months ago shepherl 3.8k
0
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4
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1.1k
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News: List of Deprecated Packages for Bioc3.15
Devel Deprecation Release Bioconductor
2.1 years ago • updated 18 months ago shepherl 3.8k
0
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1
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792
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News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
2.0 years ago kayla.interdonato ▴ 160
0
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0
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607
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News: New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release Software Bioconductor Devel
2.1 years ago shepherl 3.8k
1
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0
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817
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News: Bioconductor Release 3.15 Schedule
Devel release packages Release devel
2.1 years ago shepherl 3.8k
0
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5
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1.3k
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News: Final List of Deprecated Packages for Bioc3.14
ExperimentData Deprecation Software Release Workflow
2.5 years ago • updated 2.0 years ago shepherl 3.8k
8
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0
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883
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News: Bioconductor 3.14 is Released!
release Packages Software Release Bioconductor
2.5 years ago shepherl 3.8k
0
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0
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788
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News: New Package Submission Deadline for Bioc Release 3.14
newpackage Deadline Release Submission
2.6 years ago shepherl 3.8k
1
vote
0
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838
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News: Bioconductor Release 3.14 Schedule
devel Devel release packages Release
2.6 years ago shepherl 3.8k
7
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6
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1.7k
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How to obtain summary statistics for all Bioc releases
bioconductor release
5.9 years ago Robert Ivanek ▴ 730
5
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0
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1.0k
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News: Bioconductor 3.13 is Released!
Release Bioconductor Packages Software
2.9 years ago shepherl 3.8k
0
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0
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713
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News: Last day to make commit before the RELEASE_3_13
Release Devel devel release Bioc3.13
2.9 years ago shepherl 3.8k
0
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3
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1.1k
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Bioconductor Release AMI's
Release release AWS AMI Bioconductor
updated 2.9 years ago by 6.7k • written 3.0 years ago by 3.8k
1
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0
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817
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News: Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation release db0
3.0 years ago kayla.interdonato ▴ 160
1
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1
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1.0k
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Rsync Access
release rsync 873
updated 3.0 years ago by 25k • written 3.0 years ago by ▴ 10
0
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1
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1.0k
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News: Bioconductor 3.13 New Package Submission Deadline
release Submission newpackage Release Deadline
3.0 years ago shepherl 3.8k
0
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0
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795
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News: Bioconductor Release 3.12 and Bioconductor Devel 3.13 Code Freeze Deadlines!
Bioconductor release devel deadline
3.0 years ago shepherl 3.8k
0
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0
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907
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News: Bioconductor Release 3.13 Schedule
release Release
3.0 years ago shepherl 3.8k
4
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0
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933
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News: Bioconductor 3.12 is Released!
Software release Bioconductor Packages Release
3.5 years ago shepherl 3.8k
0
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1
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937
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News: Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
annotation db0 news release News
3.5 years ago kayla.interdonato ▴ 160
1
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0
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981
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News: New Package Submission Deadline for Bioc Release 3.12
release new package submission deadline News
3.6 years ago shepherl 3.8k
0
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0
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957
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News: Bioconductor Release 3.12 Schedule Posted
packages release deadlines builds News
3.6 years ago shepherl 3.8k
1
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1
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911
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News: Issues with annotation packages
annotation news release News
4.0 years ago kayla.interdonato ▴ 160
0
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0
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861
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News: Bioconductor 3.11 OrgDb and TxDb packages now available
annotation news release News
4.0 years ago kayla.interdonato ▴ 160
4
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0
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804
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News: Bioconductor 3.11 is Released!
software bioconductor release packages News
4.0 years ago shepherl 3.8k
0
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0
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869
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News: Import Deadlines for RELEASE 3.11
release devel deadline bioconductor News
4.0 years ago shepherl 3.8k
0
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0
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840
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News: Last Day to Submit New Packages for Bioconductor Release 3.11
deadline new submission bioconductor release News
4.1 years ago shepherl 3.8k
0
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1
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1.1k
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News: New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release package submission docker deadline News
4.1 years ago shepherl 3.8k
0
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0
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731
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News: Deadline for devel branch 3.11 to pass R CMD build and R CMD check
release devel bioconductor News
4.1 years ago shepherl 3.8k
50 results • Page 1 of 1
Recent ...
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions by JKim • 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by James W. MacDonald 65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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