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News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
6 weeks ago • updated 6 days ago
shepherl
3.8k
0
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0
replies
60
views
News:
Important Release 3.18 Freeze Announcment
Release
release
Bioconductor
Bioconducto
6 days ago
shepherl
3.8k
0
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1
reply
224
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News:
Bioconductor 3.19 Release Schedule
Release
release
Software
6 weeks ago • updated 23 days ago
shepherl
3.8k
0
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1
reply
189
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Rcpp compilation error
Release
Rcpp
updated 5 weeks ago by
ATpoint
★ 4.0k • written 5 weeks ago by
Robert K. Bradley
▴ 40
0
votes
0
replies
183
views
News:
Note about packages submitted for Bioconductor 3.19
Release
Submission
release
Bioconductor
11 weeks ago
shepherl
3.8k
5
votes
1
reply
412
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 5 months ago by
shepherl
3.8k
1
vote
4
replies
523
views
rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene
Bioconductor3.18
DifferentialExpression
release
updated 5 months ago by
Michael Love
41k • written 5 months ago by
Nadine
▴ 60
0
votes
4
replies
684
views
News:
Important Bioconductor Release 3.18 deadlines this week
Release
Devel
release
devel
updated 6 months ago by
Guido Hooiveld
★ 3.9k • written 6 months ago by
shepherl
3.8k
1
vote
0
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358
views
News:
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0
release
Annotation
6 months ago
kayla.interdonato
▴ 160
0
votes
0
replies
389
views
News:
Bioconductor 3.18 Release Schedule
Release
Software
release
7 months ago
shepherl
3.8k
0
votes
2
replies
1.1k
views
News:
Final List of Deprecated Packages for Bioc3.7
deprecate
package
release
News
written 6.0 years ago by
shepherl
3.8k
1
vote
8
replies
1.5k
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News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 5.1 years ago by
shepherl
3.8k
0
votes
0
replies
576
views
News:
Bioconductor 3.17 is Released!
Packages
Release
Bioconductor
Software
11 months ago
shepherl
3.8k
0
votes
0
replies
469
views
News:
Bioconductor Release 3.16 Code Freeze
release
Release
Bioconductor
12 months ago
shepherl
3.8k
0
votes
0
replies
625
views
News:
Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release
db0
Annotation
13 months ago
kayla.interdonato
▴ 160
0
votes
0
replies
541
views
News:
Bioconductor 3.17 Release Schedule
Softwar
Release
Bioconductor
release
Software
13 months ago
shepherl
3.8k
1
vote
0
replies
776
views
News:
Bioconductor 3.16 is Released!
Release
Packages
Bioconductor
Software
17 months ago
shepherl
3.8k
0
votes
0
replies
548
views
News:
Last day to make commits before Release 3.16
Release
Devel
Bioconductor
release
devel
17 months ago
shepherl
3.8k
0
votes
2
replies
729
views
News:
List of Deprecated Packages for Bioc3.16
Release
Deprecation
Devel
Bioconductor
18 months ago • updated 17 months ago
shepherl
3.8k
0
votes
4
replies
1.1k
views
News:
List of Deprecated Packages for Bioc3.15
Devel
Deprecation
Release
Bioconductor
2.1 years ago • updated 18 months ago
shepherl
3.8k
0
votes
0
replies
695
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release
Devel
Bioconductor
Software
18 months ago
shepherl
3.8k
0
votes
0
replies
616
views
News:
Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release
db0
annotation
18 months ago
kayla.interdonato
▴ 160
4
votes
0
replies
639
views
News:
Bioconductor Release 3.16 Schedule
Release
Devel
packages
release
devel
19 months ago
shepherl
3.8k
8
votes
0
replies
830
views
News:
Bioconductor 3.15 is Released!
Software
Release
Packages
Bioconductor
24 months ago • updated 23 months ago
shepherl
3.8k
0
votes
5
replies
1.3k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
2.5 years ago • updated 24 months ago
shepherl
3.8k
0
votes
1
reply
784
views
News:
Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation
release
db0
2.0 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
601
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release
Software
Bioconductor
Devel
2.1 years ago
shepherl
3.8k
1
vote
0
replies
811
views
News:
Bioconductor Release 3.15 Schedule
Devel
release
packages
Release
devel
2.1 years ago
shepherl
3.8k
8
votes
0
replies
873
views
News:
Bioconductor 3.14 is Released!
release
Packages
Software
Release
Bioconductor
2.5 years ago
shepherl
3.8k
0
votes
0
replies
782
views
News:
New Package Submission Deadline for Bioc Release 3.14
newpackage
Deadline
Release
Submission
2.6 years ago
shepherl
3.8k
1
vote
0
replies
831
views
News:
Bioconductor Release 3.14 Schedule
devel
Devel
release
packages
Release
2.6 years ago
shepherl
3.8k
5
votes
0
replies
1.0k
views
News:
Bioconductor 3.13 is Released!
Release
Bioconductor
Packages
Software
2.9 years ago
shepherl
3.8k
0
votes
0
replies
705
views
News:
Last day to make commit before the RELEASE_3_13
Release
Devel
devel
release
Bioc3.13
2.9 years ago
shepherl
3.8k
0
votes
3
replies
1.1k
views
Bioconductor Release AMI's
Release
release
AWS
AMI
Bioconductor
updated 2.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 2.9 years ago by
shepherl
3.8k
1
vote
0
replies
813
views
News:
Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation
release
db0
3.0 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
788
views
News:
Bioconductor Release 3.12 and Bioconductor Devel 3.13 Code Freeze Deadlines!
Bioconductor
release
devel
deadline
3.0 years ago
shepherl
3.8k
1
vote
1
reply
1.0k
views
Rsync Access
release
rsync
873
updated 3.0 years ago by
Martin Morgan
25k • written 3.0 years ago by
workmanld
▴ 10
0
votes
1
reply
999
views
News:
Bioconductor 3.13 New Package Submission Deadline
release
Submission
newpackage
Release
Deadline
3.0 years ago
shepherl
3.8k
0
votes
0
replies
898
views
News:
Bioconductor Release 3.13 Schedule
release
Release
3.0 years ago
shepherl
3.8k
4
votes
0
replies
921
views
News:
Bioconductor 3.12 is Released!
Software
release
Bioconductor
Packages
Release
3.5 years ago
shepherl
3.8k
0
votes
1
reply
932
views
News:
Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
annotation
db0
news
release
News
3.5 years ago
kayla.interdonato
▴ 160
1
vote
0
replies
974
views
News:
New Package Submission Deadline for Bioc Release 3.12
release
new package
submission
deadline
News
3.6 years ago
shepherl
3.8k
0
votes
0
replies
952
views
News:
Bioconductor Release 3.12 Schedule Posted
packages
release
deadlines
builds
News
3.6 years ago
shepherl
3.8k
1
vote
1
reply
904
views
News:
Issues with annotation packages
annotation
news
release
News
4.0 years ago • updated 3.9 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
849
views
News:
Bioconductor 3.11 OrgDb and TxDb packages now available
annotation
news
release
News
4.0 years ago
kayla.interdonato
▴ 160
4
votes
0
replies
795
views
News:
Bioconductor 3.11 is Released!
software
bioconductor
release
packages
News
4.0 years ago
shepherl
3.8k
0
votes
0
replies
861
views
News:
Import Deadlines for RELEASE 3.11
release
devel
deadline
bioconductor
News
4.0 years ago
shepherl
3.8k
0
votes
0
replies
831
views
News:
Last Day to Submit New Packages for Bioconductor Release 3.11
deadline
new submission
bioconductor
release
News
4.0 years ago
shepherl
3.8k
0
votes
1
reply
1.1k
views
News:
New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release
package submission
docker
deadline
News
4.1 years ago
shepherl
3.8k
0
votes
0
replies
726
views
News:
Deadline for devel branch 3.11 to pass R CMD build and R CMD check
release
devel
bioconductor
News
4.1 years ago
shepherl
3.8k
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Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
sredemption
• 0
Try library(enrichplot) dotplot(gsea_FS, showCategory=10, split=".sign") + facet_grid(.~.sign)
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you for your reply and I know there is another post similar to this you had mentioned this. How are the genes that I mentioned in the…
Answer: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
The genes are automatically ordered within `fgsea`, there is no need to sort them manually.
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
ATpoint
★ 4.0k
Make an MAplot. There is almost certainly an issue with normalization here given the very biased distribution of logFCs as in this Volcano.
Votes
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
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