Bioconductor RemoveBatchEffect

Showing : removeBatchEffect • reset

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13k

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limma removeBatchEffect heatmap clustering

updated 8.3 years ago by Bernd Klaus ▴ 610 • written 8.3 years ago by Ekarl2 ▴ 80

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10k

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limma differential gene expression clustering removebatcheffect

updated 6.6 years ago by Gordon Smyth 50k • written 6.6 years ago by lirongrossmann ▴ 80

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8.5k

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limma removebatcheffect

updated 6.6 years ago by Gordon Smyth 50k • written 9.7 years ago by Rao,Xiayu ▴ 550

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5.8k

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limma removebatcheffect deseq2

updated 7.9 years ago by Ryan C. Thompson ★ 7.9k • written 7.9 years ago by ompandey ▴ 10

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2.6k

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edger removeBatchEffect cpm logCPM limma

4.9 years ago altintas.ali • 0

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2.2k

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 7.5 years ago by Jakub ▴ 50 • written 7.5 years ago by amoltej ▴ 10

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1.6k

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edger r batcheffect clustering removeBatchEffect

updated 4.9 years ago by James W. MacDonald 65k • written 4.9 years ago by Biologist ▴ 110

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4.2k

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batch effect removebatcheffect edgeR rld DEseq2

5.7 years ago Antonio Ahn ▴ 10

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2.6k

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ruvseq edger ruvg removebatcheffect

updated 8.2 years ago by Aaron Lun ★ 28k • written 8.2 years ago by g.atla ▴ 10

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3.5k

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RUVSeq FPKM removeBatchEffect RNA-seq sva

updated 2.3 years ago by ATpoint ★ 4.0k • written 3.1 years ago by Xiaojie Cheng • 0

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1.4k

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edgeR removeBatchEffect nested design

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by Jenny Drnevich ★ 2.0k

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1.3k

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limma removebatcheffect

7.4 years ago Keifa ▴ 10

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890

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Microarray DifferentialExpression limma MicroarrayData removebatcheffect

15 months ago dqt • 0

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2.0k

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sva removebatcheffect R

updated 6.9 years ago by sina.nassiri ▴ 130 • written 6.9 years ago by aina.jene ▴ 10

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757

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removeBatchEffect limma

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by Sam ▴ 10

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1.5k

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SC3 batch effect removebatcheffect

updated 6.4 years ago by Vladimir Kiselev ▴ 150 • written 6.4 years ago by muad.abdelhay ▴ 10

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2.3k

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sva R removebatcheffect

6.9 years ago aina.jene ▴ 10

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Comment: geneList error in clusterprofiler by Ana • 0

Ahh thank you, that fixed it!

Answer: geneList error in clusterprofiler by Basti ▴ 760

Have a look at the documentation : https://www.rdocumentation.org/packages/clusterProfiler/versions/3.0.4/topics/gseGO geneList argument s…

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Answer: geneList error in clusterprofiler

Comment: Memory errors using read.bismark?

Comment: Not fully paired differential gene expression analysis

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

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