Bioconductor Repitools

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Alignment convert Repitools Alignment convert Repitools

updated 4 months ago by Marge • 0 • written 11.3 years ago by José Luis Lavín ▴ 280

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

updated 12.5 years ago by Chao-Jen Wong ▴ 580 • written 12.5 years ago by Guest User ★ 13k

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GO Repitools GO Repitools

updated 10.4 years ago by Dario Strbenac ★ 1.5k • written 10.4 years ago by Tim Smith ★ 1.1k

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

10.1 years ago Dario Strbenac ★ 1.5k

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876

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repitools

8.7 years ago Matthias Lienhard ▴ 240

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879

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Baymeth methylation MBD-seq Repitools

7.9 years ago pm2015 • 0

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repitools bioconductor cpgDensityCalc

7.0 years ago divyswar01 • 0

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repitools promoter tss annotation

6.1 years ago Ryan C. Thompson ★ 7.9k

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956

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limma Repitools limma Repitools

11.1 years ago Guest User ★ 13k

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

10.1 years ago Jaritz,Markus ▴ 20

10 results • Page 1 of 1

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k