Bioconductor Repitools

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repitools promoter tss annotation

5.2 years ago Ryan C. Thompson 7.8k

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repitools bioconductor cpgDensityCalc

6.1 years ago divyswar01 • 0

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Baymeth methylation MBD-seq Repitools

7.0 years ago pm2015 • 0

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repitools

7.8 years ago Matthias Lienhard ▴ 230

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

9.2 years ago Dario Strbenac ★ 1.5k

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

9.3 years ago Jaritz,Markus ▴ 20

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GO Repitools GO Repitools

updated 9.5 years ago by Dario Strbenac ★ 1.5k • written 9.5 years ago by Tim Smith ★ 1.1k

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limma Repitools limma Repitools

10.2 years ago Guest User ★ 12k

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Alignment convert Repitools Alignment convert Repitools

updated 10.4 years ago by Dario Strbenac ★ 1.5k • written 10.4 years ago by José Luis Lavín ▴ 280

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

updated 11.6 years ago by Chao-Jen Wong ▴ 580 • written 11.6 years ago by Guest User ★ 12k

10 results • Page 1 of 1

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Comment: How to update a package at Bioconductor by ma79 • 0

thanks, just informed the original maintainer to send an email.

Comment: Error: biomaRt has encountered an unexpected server error. by Mike Smith ★ 6.0k

Unfortunately, the BioMart LDS functionality have been flaky for a while now e.g. https://support.bioconductor.org/p/9143401/ , https:/…

Comment: Use with_go along with other filters in getBM function by Mike Smith ★ 6.0k

Hi @rubbit0, I'm not sure I understand what you're trying to do. Do you have a long list of Ensembl Gene IDs and you're trying to select …

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20

Dear Gordon, these are my metadata. As you see some subject are missing for timepoint 1 Subject Timepoint 1 ID1 Baselin…

Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

Sure, noted.

Votes

Dispersion plot -Interpretation -DESeq2

Answer: Dispersion Estimates and MA plots

DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.

WGCNA coupled with differential expression analysis: question about baseline module detection

WGCNA with paired samples

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