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repitools
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BAM files to Genomic Ranges object
Alignment
convert
Repitools
Alignment
convert
Repitools
updated 4 months ago by
Marge
• 0 • written 11.2 years ago by
José Luis Lavín
▴ 280
0
votes
3
replies
1.7k
views
Repitools/ClusterPlots
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
updated 12.4 years ago by
Chao-Jen Wong
▴ 580 • written 12.4 years ago by
Guest User
★ 13k
0
votes
5
replies
2.0k
views
Graph of methylation data around TSS - Repitools or other package?
GO
Repitools
GO
Repitools
updated 10.4 years ago by
Dario Strbenac
★ 1.5k • written 10.4 years ago by
Tim Smith
★ 1.1k
0
votes
0
replies
972
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.1 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
863
views
SssI free analysis in BayMeth/Repitools
repitools
8.7 years ago
Matthias Lienhard
▴ 240
0
votes
0
replies
867
views
Analysis of MBD-seq data without ssl control using BayMeth
Baymeth
methylation
MBD-seq
Repitools
7.8 years ago
pm2015
• 0
1
vote
2
replies
1.3k
views
cpgDensityCalc function in Repitools giving contradictory tools
repitools
bioconductor
cpgDensityCalc
7.0 years ago
divyswar01
• 0
0
votes
3
replies
1.8k
views
How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.0 years ago
Ryan C. Thompson
★ 7.9k
0
votes
0
replies
941
views
Analysing grouped datasets in repitools
limma
Repitools
limma
Repitools
11.1 years ago
Guest User
★ 13k
0
votes
0
replies
1.3k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.1 years ago
Jaritz,Markus
▴ 20
10 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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50k
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