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repitools
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BAM files to Genomic Ranges object
Alignment
convert
Repitools
Alignment
convert
Repitools
updated 12 months ago by
Marge
• 0 • written 11.9 years ago by
José Luis Lavín
▴ 280
0
votes
3
replies
1.9k
views
Repitools/ClusterPlots
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
updated 13.1 years ago by
Chao-Jen Wong
▴ 580 • written 13.1 years ago by
Guest User
★ 13k
0
votes
5
replies
2.3k
views
Graph of methylation data around TSS - Repitools or other package?
GO
Repitools
GO
Repitools
updated 11.0 years ago by
Dario Strbenac
★ 1.5k • written 11.0 years ago by
Tim Smith
★ 1.1k
0
votes
0
replies
1.1k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.7 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
997
views
SssI free analysis in BayMeth/Repitools
repitools
9.4 years ago
Matthias Lienhard
▴ 280
0
votes
0
replies
1.0k
views
Analysis of MBD-seq data without ssl control using BayMeth
Baymeth
methylation
MBD-seq
Repitools
8.5 years ago
pm2015
• 0
1
vote
2
replies
1.5k
views
cpgDensityCalc function in Repitools giving contradictory tools
repitools
bioconductor
cpgDensityCalc
7.6 years ago
divyswar01
• 0
0
votes
3
replies
2.2k
views
How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.7 years ago
Ryan C. Thompson
★ 7.9k
0
votes
0
replies
1.1k
views
Analysing grouped datasets in repitools
limma
Repitools
limma
Repitools
11.8 years ago
Guest User
★ 13k
0
votes
0
replies
1.4k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.8 years ago
Jaritz,Markus
▴ 20
10 results • Page
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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Aaron Lun
★ 28k
You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…
Comment: contrast matrix design for a continuous variable
by
dtzhu337
• 0
Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…
Answer: contrast matrix design for a continuous variable
by
Gordon Smyth
52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd
by
liu.n
• 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd
by
joseph.joonsang
• 0
> dim(spe) [1] 19962 425
Votes
Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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