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repitools
•
reset
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3
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2.2k
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How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.7 years ago
Ryan C. Thompson
★ 7.9k
1
vote
2
replies
1.5k
views
cpgDensityCalc function in Repitools giving contradictory tools
repitools
bioconductor
cpgDensityCalc
7.6 years ago
divyswar01
• 0
0
votes
0
replies
1.0k
views
Analysis of MBD-seq data without ssl control using BayMeth
Baymeth
methylation
MBD-seq
Repitools
8.5 years ago
pm2015
• 0
0
votes
0
replies
995
views
SssI free analysis in BayMeth/Repitools
repitools
9.3 years ago
Matthias Lienhard
▴ 280
0
votes
0
replies
1.1k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.7 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.4k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.8 years ago
Jaritz,Markus
▴ 20
0
votes
5
replies
2.3k
views
Graph of methylation data around TSS - Repitools or other package?
GO
Repitools
GO
Repitools
updated 11.0 years ago by
Dario Strbenac
★ 1.5k • written 11.0 years ago by
Tim Smith
★ 1.1k
0
votes
0
replies
1.1k
views
Analysing grouped datasets in repitools
limma
Repitools
limma
Repitools
11.8 years ago
Guest User
★ 13k
0
votes
21
replies
7.2k
views
BAM files to Genomic Ranges object
Alignment
convert
Repitools
Alignment
convert
Repitools
updated 12 months ago by
Marge
• 0 • written 11.9 years ago by
José Luis Lavín
▴ 280
0
votes
3
replies
1.9k
views
Repitools/ClusterPlots
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
updated 13.1 years ago by
Chao-Jen Wong
▴ 580 • written 13.1 years ago by
Guest User
★ 13k
10 results • Page
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Comment: Differential Expression Genes as Independent Variables
by
Dario Strbenac
★ 1.5k
Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …
Comment: rrvgo::calculateSimMatrix() error
by
Phila
• 0
Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/
Comment: Merge Replicates vs Mixed Model
by
gabriel.hoffman
▴ 170
For your proteomics data, your normalization is correct. I had assumed it was RNA-seq because that is what I think about most. When using…
Comment: What type of counts data to import for performing Isoform analysis in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.
Comment: Differential Expression Genes as Independent Variables
by
Gordon Smyth
52k
Such an analysis cannot be done in limma. Sorry, I cannot tell you how to do it or even whether it is possible.
Votes
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Transcript-level differential expression using DESeq2
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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