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repitools
•
reset
0
votes
3
replies
1.8k
views
How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.1 years ago
Ryan C. Thompson
★ 7.9k
1
vote
2
replies
1.3k
views
cpgDensityCalc function in Repitools giving contradictory tools
repitools
bioconductor
cpgDensityCalc
7.0 years ago
divyswar01
• 0
0
votes
0
replies
880
views
Analysis of MBD-seq data without ssl control using BayMeth
Baymeth
methylation
MBD-seq
Repitools
7.9 years ago
pm2015
• 0
0
votes
0
replies
880
views
SssI free analysis in BayMeth/Repitools
repitools
8.7 years ago
Matthias Lienhard
▴ 240
0
votes
0
replies
988
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.1 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.3k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.2 years ago
Jaritz,Markus
▴ 20
0
votes
5
replies
2.0k
views
Graph of methylation data around TSS - Repitools or other package?
GO
Repitools
GO
Repitools
updated 10.4 years ago by
Dario Strbenac
★ 1.5k • written 10.4 years ago by
Tim Smith
★ 1.1k
0
votes
0
replies
960
views
Analysing grouped datasets in repitools
limma
Repitools
limma
Repitools
11.1 years ago
Guest User
★ 13k
0
votes
21
replies
6.5k
views
BAM files to Genomic Ranges object
Alignment
convert
Repitools
Alignment
convert
Repitools
updated 4 months ago by
Marge
• 0 • written 11.3 years ago by
José Luis Lavín
▴ 280
0
votes
3
replies
1.7k
views
Repitools/ClusterPlots
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
updated 12.5 years ago by
Chao-Jen Wong
▴ 580 • written 12.5 years ago by
Guest User
★ 13k
10 results • Page
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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ATpoint
★ 4.0k
Popular Question
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Gordon Smyth
50k
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to
i.sudbery
▴ 40
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Michael Love
41k
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shepherl
3.8k
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