Bioconductor Repitools

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Alignment convert Repitools Alignment convert Repitools

updated 2.1 years ago by Marge • 0 • written 12.9 years ago by José Luis Lavín ▴ 280

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GO Repitools GO Repitools

updated 12.1 years ago by Dario Strbenac ★ 1.6k • written 12.1 years ago by Tim Smith ★ 1.1k

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

updated 14.1 years ago by Chao-Jen Wong ▴ 580 • written 14.1 years ago by Guest User ★ 13k

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repitools promoter tss annotation

7.8 years ago Ryan C. Thompson ★ 7.9k

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repitools bioconductor cpgDensityCalc

8.7 years ago divyswar01 • 0

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

11.8 years ago Jaritz,Markus ▴ 20

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

11.8 years ago Dario Strbenac ★ 1.6k

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repitools

10.4 years ago Matthias Lienhard ▴ 280

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Baymeth methylation MBD-seq Repitools

9.5 years ago pm2015 • 0

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limma Repitools limma Repitools

12.8 years ago Guest User ★ 13k

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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