Bioconductor Repitools

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repitools bioconductor cpgDensityCalc

7.0 years ago divyswar01 • 0

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Alignment convert Repitools Alignment convert Repitools

updated 4 months ago by Marge • 0 • written 11.3 years ago by José Luis Lavín ▴ 280

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limma Repitools limma Repitools

11.1 years ago Guest User ★ 13k

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GO Repitools GO Repitools

updated 10.4 years ago by Dario Strbenac ★ 1.5k • written 10.4 years ago by Tim Smith ★ 1.1k

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

10.1 years ago Jaritz,Markus ▴ 20

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

10.1 years ago Dario Strbenac ★ 1.5k

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repitools

8.7 years ago Matthias Lienhard ▴ 240

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Baymeth methylation MBD-seq Repitools

7.9 years ago pm2015 • 0

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

updated 12.4 years ago by Chao-Jen Wong ▴ 580 • written 12.5 years ago by Guest User ★ 13k

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repitools promoter tss annotation

6.1 years ago Ryan C. Thompson ★ 7.9k

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Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760

The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/

Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k

I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…

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Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

DESeq2 variance transformation error and plot dispersion Estimate

A: DESeq2 variance transformation error and plot dispersion Estimate

ensembl to hgnc symbols creates duplicates

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