Biostar Replicates

Showing : replicates • reset

votes

replies

305

views

deseq2 R bioconductor RNA_Seq replicates

updated 2.5 years ago by swbarnes2 ★ 1.0k • written 2.5 years ago by aishu.jp ▴ 20

votes

replies

615

views

rnaseq deseq2 differential expression batch effect replicates

updated 2.7 years ago by Michael Love 36k • written 2.7 years ago by Nik dAK ▴ 10

votes

replies

2.5k

views

deseq2 replicates error DESeqDataSetFromMatrix

updated 3.1 years ago by Michael Love 36k • written 3.1 years ago by Yonatan Amzaleg • 0

vote

replies

1.7k

views

limma proteomics replicates

updated 3.8 years ago by Aaron Lun ★ 27k • written 3.8 years ago by ivansilbern • 0

votes

replies

1.2k

views

limma duplicatecorrelation replicates

5.0 years ago rwalke13 • 0

votes

replies

1.2k

views

deseq2 replicates

updated 5.3 years ago by Michael Love 36k • written 5.3 years ago by le2336 ▴ 20

votes

replies

3.9k

views

DESEQ deseq2 deseq replicates biologicalreplicates

6.5 years ago wd ▴ 30

votes

809

views

rnbeads replicates

updated 6.5 years ago by rnbeads • 0 • written 6.5 years ago by Jon Manning ▴ 40

votes

replies

675

views

replicates

6.7 years ago efratdahan21 • 0

votes

replies

1.8k

views

edgeR rna-seq replicates

updated 7.3 years ago by James W. MacDonald 59k • written 7.3 years ago by eb0906 • 0

10 results • Page 1 of 1

Recent ...

Replies

Comment: UniprotKB AC/ID to Entrez ID Conversion by tom.kloter • 0

Thanks a lot for your response! I tried the code in my script and got to the following result: ``` > up <- UniProt.ws(taxId=9606) > up "U…

Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Guido Hooiveld ★ 3.2k

Regarding the normalization method (SCAN); I have only used RMA for the reasons James explained in one of your other threads (https://suppo…

Answer: UniprotKB AC/ID to Entrez ID Conversion by Guido Hooiveld ★ 3.2k

The key to realize is that your input is a vector of Uniprot **ID**s (also known as 'entry names') . The central identifier in the Uniprot …

Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Yang Shi • 0

Thanks sir! The normalization of SCAN not only log2 but also center to zero transformation. But in my opinion, the latter (center to 0) is …

Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Yang Shi • 0

Thanks sir! I got it now!

Votes

Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array

Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook

Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook

A: coefficient not estimable (limma warning)

Awards • All

Scholar to Guido Hooiveld ★ 3.2k

Scholar to Kevin Blighe 3.5k

Scholar to SamGG ▴ 270

Prophet to johnmcma ▴ 10