Bioconductor Replicates

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868

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conditions replicates SmallRNAData DESeq2

updated 3 months ago by Kevin Blighe ★ 3.9k • written 4 months ago by samer ▴ 10

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5.1k

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DESEQ deseq2 deseq replicates biologicalreplicates

8.4 years ago wd ▴ 30

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2.3k

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edgeR rna-seq replicates

updated 9.2 years ago by James W. MacDonald 65k • written 9.2 years ago by eb0906 • 0

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2.0k

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limma duplicatecorrelation replicates

7.0 years ago rwalke13 • 0

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3.2k

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deseq2 replicates error DESeqDataSetFromMatrix

updated 5.1 years ago by Michael Love 41k • written 5.1 years ago by Yonatan Amzaleg • 0

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629

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DESeq2 timecoursedata replicates

updated 13 months ago by Michael Love 41k • written 14 months ago by fepesanz8 • 0

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1.6k

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deseq2 replicates

updated 7.2 years ago by Michael Love 41k • written 7.2 years ago by le2336 ▴ 20

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2.8k

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limma proteomics replicates

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by ivansilbern • 0

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1.8k

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rnaseq deseq2 differential expression batch effect replicates

updated 4.6 years ago by Michael Love 41k • written 4.6 years ago by Nik dAK ▴ 10

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2.6k

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deseq2 R bioconductor RNA_Seq replicates

updated 4.4 years ago by swbarnes2 ★ 1.3k • written 4.4 years ago by aishu.jp ▴ 30

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1.2k

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rnbeads replicates

updated 8.4 years ago by rnbeads • 0 • written 8.4 years ago by Jon Manning ▴ 40

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891

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replicates

8.7 years ago efratdahan21 • 0

12 results • Page 1 of 1

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Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…

Votes

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Awards • All

Scholar to ATpoint ★ 4.0k