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replicates
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2
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10
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5.0k
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DESEQ2 with 3 biological replicates for control and 1 biological replicate for treatment
DESEQ
deseq2
deseq
replicates
biologicalreplicates
8.3 years ago
wd
▴ 30
2
votes
3
replies
3.2k
views
DESeq2- preliminary study no replicates
deseq2
replicates
error
DESeqDataSetFromMatrix
updated 5.0 years ago by
Michael Love
41k • written 5.0 years ago by
Yonatan Amzaleg
• 0
1
vote
2
replies
2.8k
views
Limma: technical and biological replicates in proteomics data
limma
proteomics
replicates
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
ivansilbern
• 0
5
votes
2
replies
2.5k
views
How to perform DEseq2 on datasets without replicates or merged replicates
deseq2
R
bioconductor
RNA_Seq
replicates
updated 4.3 years ago by
swbarnes2
★ 1.3k • written 4.3 years ago by
aishu.jp
▴ 30
2
votes
5
replies
2.3k
views
RNA-Seq analysis edgeR
edgeR
rna-seq
replicates
updated 9.1 years ago by
James W. MacDonald
65k • written 9.1 years ago by
eb0906
• 0
4
votes
4
replies
2.0k
views
Using duplicateCorrelation to handle replicate samples
limma
duplicatecorrelation
replicates
6.9 years ago
rwalke13
• 0
3
votes
2
replies
1.7k
views
Variation between technical replicates (DESeq2, batch effects)
rnaseq
deseq2
differential expression
batch effect
replicates
updated 4.5 years ago by
Michael Love
41k • written 4.5 years ago by
Nik dAK
▴ 10
3
votes
2
replies
1.6k
views
Uneven group sizes
deseq2
replicates
updated 7.2 years ago by
Michael Love
41k • written 7.2 years ago by
le2336
▴ 20
0
votes
1
reply
1.2k
views
RnBeads and technical replicates in differential analysis
rnbeads
replicates
updated 8.4 years ago by
rnbeads
• 0 • written 8.4 years ago by
Jon Manning
▴ 40
0
votes
0
replies
880
views
dexseq without replicates
replicates
8.6 years ago
efratdahan21
• 0
1
vote
13
replies
781
views
Small RNA-seq Analysis DESEQ2 : Unexpected Significance
conditions
replicates
SmallRNAData
DESeq2
updated 11 weeks ago by
Kevin Blighe
★ 3.9k • written 3 months ago by
samer
▴ 10
0
votes
2
replies
606
views
DESeq2 replicates in time course data
DESeq2
timecoursedata
replicates
updated 13 months ago by
Michael Love
41k • written 13 months ago by
fepesanz8
• 0
12 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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