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replicates
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reset
5
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2
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How to perform DEseq2 on datasets without replicates or merged replicates
deseq2
R
bioconductor
RNA_Seq
replicates
updated 4.4 years ago by
swbarnes2
★ 1.3k • written 4.4 years ago by
aishu.jp
▴ 30
0
votes
1
reply
1.2k
views
RnBeads and technical replicates in differential analysis
rnbeads
replicates
updated 8.4 years ago by
rnbeads
• 0 • written 8.4 years ago by
Jon Manning
▴ 40
2
votes
10
replies
5.1k
views
DESEQ2 with 3 biological replicates for control and 1 biological replicate for treatment
DESEQ
deseq2
deseq
replicates
biologicalreplicates
8.4 years ago
wd
▴ 30
3
votes
2
replies
1.6k
views
Uneven group sizes
deseq2
replicates
updated 7.2 years ago by
Michael Love
41k • written 7.2 years ago by
le2336
▴ 20
4
votes
4
replies
2.0k
views
Using duplicateCorrelation to handle replicate samples
limma
duplicatecorrelation
replicates
7.0 years ago
rwalke13
• 0
1
vote
2
replies
2.8k
views
Limma: technical and biological replicates in proteomics data
limma
proteomics
replicates
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
ivansilbern
• 0
2
votes
3
replies
3.2k
views
DESeq2- preliminary study no replicates
deseq2
replicates
error
DESeqDataSetFromMatrix
updated 5.0 years ago by
Michael Love
41k • written 5.0 years ago by
Yonatan Amzaleg
• 0
3
votes
2
replies
1.8k
views
Variation between technical replicates (DESeq2, batch effects)
rnaseq
deseq2
differential expression
batch effect
replicates
updated 4.6 years ago by
Michael Love
41k • written 4.6 years ago by
Nik dAK
▴ 10
0
votes
2
replies
624
views
DESeq2 replicates in time course data
DESeq2
timecoursedata
replicates
updated 13 months ago by
Michael Love
41k • written 13 months ago by
fepesanz8
• 0
2
votes
5
replies
2.3k
views
RNA-Seq analysis edgeR
edgeR
rna-seq
replicates
updated 9.2 years ago by
James W. MacDonald
65k • written 9.2 years ago by
eb0906
• 0
1
vote
13
replies
857
views
Small RNA-seq Analysis DESEQ2 : Unexpected Significance
conditions
replicates
SmallRNAData
DESeq2
updated 3 months ago by
Kevin Blighe
★ 3.9k • written 4 months ago by
samer
▴ 10
0
votes
0
replies
889
views
dexseq without replicates
replicates
8.7 years ago
efratdahan21
• 0
12 results • Page
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Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
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Answer: OrgDb for maize
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