Bioconductor Replicates

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conditions replicates SmallRNAData DESeq2

updated 3 months ago by Kevin Blighe ★ 3.9k • written 4 months ago by samer ▴ 10

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627

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DESeq2 timecoursedata replicates

updated 13 months ago by Michael Love 41k • written 13 months ago by fepesanz8 • 0

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2.6k

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deseq2 R bioconductor RNA_Seq replicates

updated 4.4 years ago by swbarnes2 ★ 1.3k • written 4.4 years ago by aishu.jp ▴ 30

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1.8k

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rnaseq deseq2 differential expression batch effect replicates

updated 4.6 years ago by Michael Love 41k • written 4.6 years ago by Nik dAK ▴ 10

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3.2k

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deseq2 replicates error DESeqDataSetFromMatrix

updated 5.1 years ago by Michael Love 41k • written 5.1 years ago by Yonatan Amzaleg • 0

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2.8k

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limma proteomics replicates

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by ivansilbern • 0

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2.0k

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limma duplicatecorrelation replicates

7.0 years ago rwalke13 • 0

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1.6k

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deseq2 replicates

updated 7.2 years ago by Michael Love 41k • written 7.2 years ago by le2336 ▴ 20

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5.1k

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DESEQ deseq2 deseq replicates biologicalreplicates

8.4 years ago wd ▴ 30

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1.2k

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rnbeads replicates

updated 8.4 years ago by rnbeads • 0 • written 8.4 years ago by Jon Manning ▴ 40

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891

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replicates

8.7 years ago efratdahan21 • 0

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2.3k

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edgeR rna-seq replicates

updated 9.2 years ago by James W. MacDonald 65k • written 9.2 years ago by eb0906 • 0

12 results • Page 1 of 1

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Comment: Methylation Analysis experiment design using Limma by hortense96 • 0

Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…

Comment: Limma design with continuous and categorical covariates by hortense96 • 0

Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …

Answer: minfi::read.metharray.exp by Basti ▴ 770

Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…

Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0

Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …

Votes

Answer: OrgDb for maize

Answer: DESeq2 - dispersion estimation when there is none

Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

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Scholar to Gordon Smyth 50k