Bioconductor Replicates

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conditions replicates SmallRNAData DESeq2

updated 3 months ago by Kevin Blighe ★ 3.9k • written 4 months ago by samer ▴ 10

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624

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DESeq2 timecoursedata replicates

updated 13 months ago by Michael Love 41k • written 13 months ago by fepesanz8 • 0

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2.6k

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deseq2 R bioconductor RNA_Seq replicates

updated 4.4 years ago by swbarnes2 ★ 1.3k • written 4.4 years ago by aishu.jp ▴ 30

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1.8k

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rnaseq deseq2 differential expression batch effect replicates

updated 4.6 years ago by Michael Love 41k • written 4.6 years ago by Nik dAK ▴ 10

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3.2k

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deseq2 replicates error DESeqDataSetFromMatrix

updated 5.0 years ago by Michael Love 41k • written 5.0 years ago by Yonatan Amzaleg • 0

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2.8k

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limma proteomics replicates

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by ivansilbern • 0

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2.0k

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limma duplicatecorrelation replicates

7.0 years ago rwalke13 • 0

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1.6k

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deseq2 replicates

updated 7.2 years ago by Michael Love 41k • written 7.2 years ago by le2336 ▴ 20

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5.1k

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DESEQ deseq2 deseq replicates biologicalreplicates

8.4 years ago wd ▴ 30

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1.2k

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rnbeads replicates

updated 8.4 years ago by rnbeads • 0 • written 8.4 years ago by Jon Manning ▴ 40

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889

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replicates

8.7 years ago efratdahan21 • 0

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2.3k

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edgeR rna-seq replicates

updated 9.2 years ago by James W. MacDonald 65k • written 9.2 years ago by eb0906 • 0

12 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Install/Switch between multiple versions of R, Rstudio, and Bioconductor

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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