Showing : reportingtools • reset
0
votes
12
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2.2k
views
new package for generating interactive HTML reports
Network limma GOstats GSEAlm edgeR ReportingTools Network limma GOstats GSEAlm edgeR
updated 11.3 years ago by ★ 1.6k • written 11.3 years ago by ▴ 20
0
votes
8
replies
1.6k
views
ReportingTools include pvalue NA and comparissons
R reportingtools deseq2 pvalue coef
updated 7.9 years ago by 41k • written 7.9 years ago by ▴ 10
0
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7
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2.7k
views
[ReportingTools] and DESeq2 results, publish DESeqDataSet using resultsNames other than the default
Sequencing ReportingTools DESeq2 Sequencing ReportingTools DESeq2
updated 10.3 years ago by 65k • written 10.3 years ago by ▴ 30
3
votes
7
replies
1.9k
views
ReportingTools Segmentation fault
reportingtools reporting tools
updated 6.0 years ago by ▴ 10 • written 6.0 years ago by ▴ 20
1
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6
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1.9k
views
Problem on annotation of Deseq2 on reportingtools
Deseq2 reportingtools
updated 9.4 years ago by ▴ 70 • written 9.4 years ago by ▴ 40
4
votes
6
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2.7k
views
HTMLReport of DESeq2 results with Ensembl Gene Ids
reportingtools publish deseq2
updated 9.1 years ago by ▴ 150 • written 9.4 years ago by • 0
0
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5
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2.6k
views
Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 9.8 years ago by ▴ 160 • written 9.9 years ago by 65k
0
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5
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1.7k
views
ReportingTools error message
DESeq ReportingTools DESeq2 DESeq ReportingTools DESeq2
9.9 years ago Assa Yeroslaviz ★ 1.5k
2
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4
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1.2k
views
ResrtingTools include pvalue NA
reportingtools deseq2 NA pvalue
updated 7.8 years ago by 41k • written 7.8 years ago by ▴ 10
0
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4
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1.4k
views
Error in GOFrame due to NA for unsupported organism (Gene Ontology)
reportingtools annotationhub gostats
updated 7.8 years ago by 65k • written 7.8 years ago by ▴ 20
1
vote
4
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854
views
ReportingTools publish(): no image when .modifyDF argument is included
ReportingTools
updated 5.1 years ago by 65k • written 5.1 years ago by • 0
1
vote
4
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1.1k
views
Methods in ReportingTools
reportingtools
updated 8.6 years ago by ▴ 70 • written 8.6 years ago by • 0
2
votes
3
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1.5k
views
HTMLReport with Ensembl IDs, with multifactorial design
DESeq2 ReportingTools
updated 9.1 years ago by 65k • written 9.1 years ago by ▴ 150
0
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3
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1.0k
views
Error when installing ReportingTools
reportingtools
7.8 years ago • updated 7.7 years ago Asma rabe ▴ 290
0
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3
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1.8k
views
ReportingTools and gene annotation
Annotation GO cycle ReportingTools DESeq2 Annotation GO cycle ReportingTools DESeq2
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 340
0
votes
2
replies
1.7k
views
Generating database with non model species to be use by ReportingTools
reportingtools annotationdbi annotationhub ensembldb
updated 7.8 years ago by ★ 2.0k • written 7.8 years ago by ▴ 20
0
votes
2
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1.1k
views
ReportingTools does not work with PFAMHyperGResult object
reportingtools
updated 9.6 years ago by 1.6k • written 9.6 years ago by • 0
2
votes
2
replies
1.1k
views
How to add more columns to ReportingTools output?
reportingtools microarray annotation differential expression differential analysis
updated 6.4 years ago by 65k • written 6.4 years ago by • 0
0
votes
2
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1.6k
views
Question about ReportingTools used with DESeq2
GO BSgenome BSgenome ReportingTools DESeq2 GO BSgenome BSgenome ReportingTools DESeq2
updated 10.4 years ago by 65k • written 10.4 years ago by ▴ 80
0
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2
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1.4k
views
hwriter or reportingtools: open link in new tab?
hyperlink ReportingTools hwriter
9.0 years ago Wade Davis ▴ 60
1
vote
1
reply
1.1k
views
Having issues mapping gene Ids during ReportingTools::publish() from Bioconductor.
ReportingTools RNA-Seq RMarkdown
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 20
0
votes
1
reply
1.1k
views
ReportingTools package
ReportingTools ReportingTools
updated 10.5 years ago by ▴ 10 • written 10.5 years ago by ▴ 160
1
vote
1
reply
1.1k
views
How to add search functions and additional fields to the html file of DESeq2 results created with ReportingTools
ReportingTools deseq2 hwriter
updated 8.8 years ago by 65k • written 8.8 years ago by ▴ 30
0
votes
1
reply
1.5k
views
DESeq2 followed by Reporting tools lists blank ensemble gene ID's and symbols but has image, logFC and p-value intact in HTML file
deseq2 rnaseq reportingtools
updated 8.0 years ago by 41k • written 8.0 years ago by • 0
0
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1
reply
1.6k
views
ReportingTools: Error using packet 1 arguments must have same length
reportingtools
5.4 years ago mmokrejs • 0
6
votes
1
reply
3.0k
views
[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing Annotation convert biomaRt ReportingTools DESeq2 Sequencing Annotation convert
updated 9.3 years ago by ▴ 370 • written 10.4 years ago by ▴ 160
0
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0
replies
1.2k
views
KEGG pathway analysis with ReportingTools
Pathways GO ReportingTools Pathways GO ReportingTools
10.1 years ago Mayte Suarez-Farinas ▴ 510
0
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0
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851
views
ReportingTools: formatting html report
Alignment ReportingTools Alignment ReportingTools
10.9 years ago Gabriel Becker ▴ 70
0
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0
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633
views
Changing vertical scale to linear for expression reporting of DESeqDataSet
reportingtools deseq2
5.6 years ago trebbiano • 0
0
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0
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2.0k
views
emacs org mode html export using jQuery DataTables (WAS: new package for generating interactive HTML reports)
Network limma GOstats GSEAlm edgeR ReportingTools Network limma GOstats GSEAlm edgeR
11.3 years ago Malcolm Cook ★ 1.6k
0
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0
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1.2k
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Change column width in ReportingTools
reportingtools
8.6 years ago benedikt.athmer • 0
0
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0
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1.6k
views
Select what conditionsto graph in Report tools with Deseq containing multiple conditions
deseq2 ggplot2 reportingtools
7.5 years ago abass.conteh • 0
32 results • Page 1 of 1
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Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…
Answer: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
Votes
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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