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reproducibility
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Variance between runs of Rsubread
rsubread
alignment
reproducibility
8.4 years ago
Isaac Virshup
• 0
2
votes
4
replies
2.1k
views
no date tag included in docker ps output
docker
reproducibility
9.4 years ago
anton.kratz
▴ 60
0
votes
3
replies
2.9k
views
Locating older version of Bioconductor packages
reproducibility
archive
source code
updated 9.3 years ago by
Dan Tenenbaum
★ 8.2k • written 9.3 years ago by
brucbruc
• 0
1
vote
2
replies
1.6k
views
Package archive for the purpose of reproducible research
archive
reproducibility
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
robert.bruccoleri
▴ 10
3
votes
2
replies
1.3k
views
DESeq2: Question regarding changes between Bioconductor 3.2 and 3.4 or recent version changes
deseq2
new version
bioconductor
software error
reproducibility
8.3 years ago
Daniel Elsner
• 0
3
votes
2
replies
1.1k
views
Does a specific bioconductor version constrain versions of non-bioconductor packages?
reproducibility
versions
installing
base-r
updated 4.9 years ago by
Mike Smith
★ 6.6k • written 4.9 years ago by
Yannick Wurm
▴ 40
0
votes
0
replies
956
views
Which tools should we use to make research reproducible?
bioconductor
R
reproducibility
8.3 years ago
lwumd1400
• 0
7 results • Page
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Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
by
Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
It seems likely this was installed as an admin account and a user account would not be able to update. Someone with admin access should run…
Votes
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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