Bioconductor Reproducibility

Showing : reproducibility • reset

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deseq2 new version bioconductor software error reproducibility

8.3 years ago Daniel Elsner • 0

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1.1k

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reproducibility versions installing base-r

updated 4.9 years ago by Mike Smith ★ 6.6k • written 4.9 years ago by Yannick Wurm ▴ 40

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2.1k

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docker reproducibility

9.4 years ago anton.kratz ▴ 60

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archive reproducibility

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by robert.bruccoleri ▴ 10

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rsubread alignment reproducibility

8.4 years ago Isaac Virshup • 0

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2.9k

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reproducibility archive source code

updated 9.3 years ago by Dan Tenenbaum ★ 8.2k • written 9.3 years ago by brucbruc • 0

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956

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bioconductor R reproducibility

8.3 years ago lwumd1400 • 0

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Comment: Differential variance analysis - can i use deseq2 by Marwan • 0

Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…

Answer: Differential variance analysis - can i use deseq2 by Michael Love 43k

We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …

Comment: For some reason I can't update BiocManager to 3.20 by shepherl 4.1k

It seems likely this was installed as an admin account and a user account would not be able to update. Someone with admin access should run…

Answer: UniProt.ws query for single UniRef90 ID takes several minutes by James W. MacDonald 68k

Any query over the internet can vary in the time to completion due to the vagaries of the connection you may have. I just tried your query …

Answer: batch effect removal for agilent microarray data by James W. MacDonald 68k

If all of the samples in group 155 are one type, and all the other samples in 438 are the other, then no. The biological and technical vari…

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Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

A: How to extract DESeq2 results for an interaction design

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?

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