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HISAT2 mapping
hisat2
results
updated 12 months ago by
ATpoint
★ 4.0k • written 12 months ago by
ali
• 0
0
votes
1
reply
1.9k
views
Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 17 months ago by
Michael Love
41k • written 17 months ago by
Chiara
• 0
1
vote
2
replies
2.9k
views
error in DESeq2 results(dds)
DESeq2
datasetfrommatrix
results
error
3.1 years ago
james
• 0
3
votes
6
replies
2.2k
views
DESEq2 - How to extract ONE results table/coefficient from the DESeqResults object
deseq2
results
DESeqResults
updated 3.6 years ago by
Michael Love
41k • written 3.6 years ago by
paula.vaccarello
• 0
2
votes
2
replies
790
views
DESeq results gives all genes
deseq2
design matrix
results
updated 5.3 years ago by
Michael Love
41k • written 5.3 years ago by
evocanres
• 0
0
votes
1
reply
879
views
Basemean always multiples of 0.5 in deseq2 results
deseq
results
baseMean
updated 5.7 years ago by
Michael Love
41k • written 5.7 years ago by
batmaiden
• 0
0
votes
3
replies
1.0k
views
A contrast with four simultaneous conditions for DESeq2?
DESeq2
contrast
results
updated 5.7 years ago by
Michael Love
41k • written 5.7 years ago by
jan.soderman
• 0
1
vote
3
replies
975
views
Results counts post DESeq same raw counts
DESeq2
results
updated 5.9 years ago by
Michael Love
41k • written 5.9 years ago by
A
▴ 40
0
votes
0
replies
749
views
[Questions about the results of the enrichGo()]More genes are involved but less biological activity.
enrichGO()
results
6.0 years ago
414457044
• 0
0
votes
5
replies
1.1k
views
results {DESeq2} parameters
deseq2
results
updated 6.1 years ago by
Michael Love
41k • written 6.1 years ago by
Aurora
▴ 20
2
votes
5
replies
1.5k
views
DEGs generation parameters and specificities
deseq2
results
design and contrast matrix
updated 6.4 years ago by
Michael Love
41k • written 7.0 years ago by
tarun2
• 0
2
votes
4
replies
1.3k
views
Tac and Bioconductor giving different results
Tac
bioconductor
results
reproducbiltiy
updated 6.4 years ago by
Steve Lianoglou
★ 13k • written 6.4 years ago by
kritikamish99
▴ 10
3
votes
2
replies
3.2k
views
results(dds) error: couldn't find results. you should first run DESeq()
deseq2
results
error
6.4 years ago
hs.lansdell
▴ 20
2
votes
8
replies
1.3k
views
Deseq2 result for a variable
deseq2
differential expression
results
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
yoursbassanio
▴ 10
2
votes
5
replies
5.1k
views
DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2
results
contrast
padj
updated 6.8 years ago by
Michael Love
41k • written 6.8 years ago by
courtney.stairs
• 0
2
votes
5
replies
3.1k
views
Limma toptable interpretation check
limma
microarray
fdr
p-value
results
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
bhgyu
▴ 30
1
vote
6
replies
1.9k
views
DESeq2: relevel contrasts after DESeq() has been called (time-course experiment of Drosophila development)
drosophila melanogaster
multiple time points
deseq2
results
development
updated 7.0 years ago by
Michael Love
41k • written 7.0 years ago by
wariobrega
• 0
4
votes
4
replies
1.8k
views
Deseq2 results interpretation
deseq2
multiple factor design
results
7.8 years ago
koeniger
▴ 10
5
votes
6
replies
18k
views
Group comparison in DESeq2
deseq2
results
updated 8.6 years ago by
Michael Love
41k • written 8.6 years ago by
jjinhyoungkim
▴ 20
6
votes
2
replies
4.7k
views
All same padj of contrast results in the DESeq2
deseq2
padj
contrast
results
updated 8.6 years ago by
Michael Love
41k • written 8.6 years ago by
jjinhyoungkim
▴ 20
0
votes
3
replies
2.0k
views
Getting different results with DESeq2
deseq2
results
rstudio
updated 8.7 years ago by
Michael Love
41k • written 8.7 years ago by
Lillyhchen
▴ 10
5
votes
4
replies
3.5k
views
limma multiple rows per gene in output (write.fit)
limma
results
8.8 years ago
Anne
• 0
2
votes
15
replies
2.9k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
9.0 years ago • updated 8.9 years ago
mnaymik
▴ 10
23 results • Page
1 of 1
Recent ...
Replies
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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