Showing : results • reset
2
votes
15
replies
3.0k
views
BiSeq trimClusters FDR.loc confusion
biseq fdr data results
9.0 years ago • updated 8.9 years ago mnaymik ▴ 10
4
votes
4
replies
1.8k
views
Deseq2 results interpretation
deseq2 multiple factor design results
7.9 years ago koeniger ▴ 10
6
votes
2
replies
4.8k
views
All same padj of contrast results in the DESeq2
deseq2 padj contrast results
updated 8.7 years ago by 41k • written 8.7 years ago by ▴ 20
5
votes
6
replies
18k
views
Group comparison in DESeq2
deseq2 results
updated 8.7 years ago by 41k • written 8.7 years ago by ▴ 20
5
votes
4
replies
3.5k
views
limma multiple rows per gene in output (write.fit)
limma results
8.9 years ago Anne • 0
2
votes
8
replies
1.3k
views
Deseq2 result for a variable
deseq2 differential expression results
updated 6.5 years ago by 41k • written 6.5 years ago by ▴ 10
3
votes
2
replies
3.3k
views
results(dds) error: couldn't find results. you should first run DESeq()
deseq2 results error
6.5 years ago hs.lansdell ▴ 20
2
votes
4
replies
1.3k
views
Tac and Bioconductor giving different results
Tac bioconductor results reproducbiltiy
updated 6.5 years ago by ★ 13k • written 6.5 years ago by ▴ 10
0
votes
5
replies
1.2k
views
results {DESeq2} parameters
deseq2 results
updated 6.1 years ago by 41k • written 6.1 years ago by ▴ 20
0
votes
1
reply
2.0k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 18 months ago by 41k • written 18 months ago by • 0
0
votes
3
replies
2.1k
views
Getting different results with DESeq2
deseq2 results rstudio
updated 8.7 years ago by 41k • written 8.7 years ago by ▴ 10
1
vote
6
replies
1.9k
views
DESeq2: relevel contrasts after DESeq() has been called (time-course experiment of Drosophila development)
drosophila melanogaster multiple time points deseq2 results development
updated 7.1 years ago by 41k • written 7.1 years ago by • 0
2
votes
5
replies
3.1k
views
Limma toptable interpretation check
limma microarray fdr p-value results
updated 6.9 years ago by ★ 28k • written 6.9 years ago by ▴ 30
2
votes
5
replies
5.2k
views
DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2 results contrast padj
updated 6.9 years ago by 41k • written 6.9 years ago by • 0
2
votes
5
replies
1.5k
views
DEGs generation parameters and specificities
deseq2 results design and contrast matrix
updated 6.4 years ago by 41k • written 7.0 years ago by • 0
1
vote
3
replies
1.0k
views
Results counts post DESeq same raw counts
DESeq2 results
updated 6.0 years ago by 41k • written 6.0 years ago by ▴ 40
0
votes
3
replies
1.0k
views
A contrast with four simultaneous conditions for DESeq2?
DESeq2 contrast results
updated 5.8 years ago by 41k • written 5.8 years ago by • 0
0
votes
1
reply
895
views
Basemean always multiples of 0.5 in deseq2 results
deseq results baseMean
updated 5.8 years ago by 41k • written 5.8 years ago by • 0
2
votes
2
replies
808
views
DESeq results gives all genes
deseq2 design matrix results
updated 5.4 years ago by 41k • written 5.4 years ago by • 0
3
votes
6
replies
2.3k
views
DESEq2 - How to extract ONE results table/coefficient from the DESeqResults object
deseq2 results DESeqResults
updated 3.6 years ago by 41k • written 3.6 years ago by • 0
1
vote
2
replies
2.9k
views
error in DESeq2 results(dds)
DESeq2 datasetfrommatrix results error
3.2 years ago james • 0
1
vote
1
reply
611
views
HISAT2 mapping
hisat2 results
updated 13 months ago by ★ 4.0k • written 13 months ago by • 0
0
votes
0
replies
763
views
[Questions about the results of the enrichGo()]More genes are involved but less biological activity.
enrichGO() results
6.1 years ago 414457044 • 0
23 results • Page 1 of 1
Recent ...
Replies
Comment: minfi::read.metharray.exp by clacarion • 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp by clacarion • 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19 by shepherl 3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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