Showing : results • reset
1
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998
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HISAT2 mapping
hisat2 results
updated 2.2 years ago by ★ 4.8k • written 2.2 years ago by • 0
0
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1
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4.0k
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Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 2.6 years ago by 43k • written 2.6 years ago by • 0
1
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2
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3.6k
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error in DESeq2 results(dds)
DESeq2 datasetfrommatrix results error
4.2 years ago james • 0
3
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6
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3.0k
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DESEq2 - How to extract ONE results table/coefficient from the DESeqResults object
deseq2 results DESeqResults
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
2
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2
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1.1k
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DESeq results gives all genes
deseq2 design matrix results
updated 6.5 years ago by 43k • written 6.5 years ago by • 0
0
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1
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1.1k
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Basemean always multiples of 0.5 in deseq2 results
deseq results baseMean
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
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3
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1.3k
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A contrast with four simultaneous conditions for DESeq2?
DESeq2 contrast results
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
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3
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1.5k
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Results counts post DESeq same raw counts
DESeq2 results
updated 7.1 years ago by 43k • written 7.1 years ago by ▴ 60
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991
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[Questions about the results of the enrichGo()]More genes are involved but less biological activity.
enrichGO() results
7.1 years ago 414457044 • 0
0
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5
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1.6k
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results {DESeq2} parameters
deseq2 results
updated 7.2 years ago by 43k • written 7.2 years ago by ▴ 20
2
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5
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1.9k
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DEGs generation parameters and specificities
deseq2 results design and contrast matrix
updated 7.5 years ago by 43k • written 8.1 years ago by • 0
2
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4
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1.7k
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Tac and Bioconductor giving different results
Tac bioconductor results reproducbiltiy
updated 7.5 years ago by ★ 13k • written 7.5 years ago by ▴ 10
3
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2
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4.3k
views
results(dds) error: couldn't find results. you should first run DESeq()
deseq2 results error
7.6 years ago hs.lansdell ▴ 20
2
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8
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1.8k
views
Deseq2 result for a variable
deseq2 differential expression results
updated 7.6 years ago by 43k • written 7.6 years ago by ▴ 10
2
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5
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6.1k
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DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2 results contrast padj
updated 7.9 years ago by 43k • written 7.9 years ago by • 0
2
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5
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4.4k
views
Limma toptable interpretation check
limma microarray fdr p-value results
updated 8.0 years ago by ★ 28k • written 8.0 years ago by ▴ 30
1
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6
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2.3k
views
DESeq2: relevel contrasts after DESeq() has been called (time-course experiment of Drosophila development)
drosophila melanogaster multiple time points deseq2 results development
updated 8.2 years ago by 43k • written 8.2 years ago by • 0
4
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4
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2.2k
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Deseq2 results interpretation
deseq2 multiple factor design results
9.0 years ago koeniger ▴ 10
5
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6
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18k
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Group comparison in DESeq2
deseq2 results
updated 9.8 years ago by 43k • written 9.8 years ago by ▴ 20
6
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2
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5.3k
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All same padj of contrast results in the DESeq2
deseq2 padj contrast results
updated 9.8 years ago by 43k • written 9.8 years ago by ▴ 20
0
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3
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2.4k
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Getting different results with DESeq2
deseq2 results rstudio
updated 9.8 years ago by 43k • written 9.8 years ago by ▴ 10
5
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4
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3.8k
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limma multiple rows per gene in output (write.fit)
limma results
10.0 years ago Anne • 0
2
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15
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3.8k
views
BiSeq trimClusters FDR.loc confusion
biseq fdr data results
10.1 years ago • updated 10.0 years ago mnaymik ▴ 10
23 results • Page 1 of 1
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Comment: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin by ATpoint ★ 4.8k
What is lac cells? You mean 7000-9000 cells? Please check first that the function runs OOM even without any of these multicore options set.…
Comment: parameters of filterByExpr by caroline.zanchi ▴ 10
It worked, I think I finally understand and accept that fact. Sorry and thank you again !
Comment: parameters of filterByExpr by Gordon Smyth 52k
You seem to be coming back to the same fixed (but incorrect) idea of what filterByExpr() should be doing. I have tried to explain that filt…
Answer: edgeR in DMR mode - replicates give batch effect - how to build design matrix wi by Gordon Smyth 52k
modelMatrixMeth() works correctly. The second replicate factor has not been lost. Please do not make ad hoc manual modifications to the de…
Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k
Probably not. Any given gene may be appended with many different GO terms, so you would end up with something that is not very useful. ``…
Votes
Answer: parameters of filterByExpr
Comment: Heatmap of rnaseq data with z-score scale
Answer: LogFC values in edgeR - w/wo intercept
How to formulate 2 factor nested design in DESeq2
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
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