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HISAT2 mapping
hisat2
results
updated 12 months ago by
ATpoint
★ 4.0k • written 12 months ago by
ali
• 0
0
votes
1
reply
2.0k
views
Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 18 months ago by
Michael Love
41k • written 18 months ago by
Chiara
• 0
1
vote
2
replies
2.9k
views
error in DESeq2 results(dds)
DESeq2
datasetfrommatrix
results
error
3.1 years ago
james
• 0
3
votes
6
replies
2.2k
views
DESEq2 - How to extract ONE results table/coefficient from the DESeqResults object
deseq2
results
DESeqResults
updated 3.6 years ago by
Michael Love
41k • written 3.6 years ago by
paula.vaccarello
• 0
2
votes
2
replies
802
views
DESeq results gives all genes
deseq2
design matrix
results
updated 5.4 years ago by
Michael Love
41k • written 5.4 years ago by
evocanres
• 0
0
votes
1
reply
891
views
Basemean always multiples of 0.5 in deseq2 results
deseq
results
baseMean
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
batmaiden
• 0
0
votes
3
replies
1.0k
views
A contrast with four simultaneous conditions for DESeq2?
DESeq2
contrast
results
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
jan.soderman
• 0
1
vote
3
replies
1000
views
Results counts post DESeq same raw counts
DESeq2
results
updated 6.0 years ago by
Michael Love
41k • written 6.0 years ago by
A
▴ 40
0
votes
0
replies
760
views
[Questions about the results of the enrichGo()]More genes are involved but less biological activity.
enrichGO()
results
6.0 years ago
414457044
• 0
0
votes
5
replies
1.2k
views
results {DESeq2} parameters
deseq2
results
updated 6.1 years ago by
Michael Love
41k • written 6.1 years ago by
Aurora
▴ 20
2
votes
4
replies
1.3k
views
Tac and Bioconductor giving different results
Tac
bioconductor
results
reproducbiltiy
updated 6.4 years ago by
Steve Lianoglou
★ 13k • written 6.4 years ago by
kritikamish99
▴ 10
3
votes
2
replies
3.3k
views
results(dds) error: couldn't find results. you should first run DESeq()
deseq2
results
error
6.5 years ago
hs.lansdell
▴ 20
2
votes
8
replies
1.3k
views
Deseq2 result for a variable
deseq2
differential expression
results
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
yoursbassanio
▴ 10
2
votes
5
replies
5.2k
views
DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2
results
contrast
padj
updated 6.9 years ago by
Michael Love
41k • written 6.9 years ago by
courtney.stairs
• 0
2
votes
5
replies
3.1k
views
Limma toptable interpretation check
limma
microarray
fdr
p-value
results
updated 6.9 years ago by
Aaron Lun
★ 28k • written 6.9 years ago by
bhgyu
▴ 30
2
votes
5
replies
1.5k
views
DEGs generation parameters and specificities
deseq2
results
design and contrast matrix
updated 6.4 years ago by
Michael Love
41k • written 7.0 years ago by
tarun2
• 0
1
vote
6
replies
1.9k
views
DESeq2: relevel contrasts after DESeq() has been called (time-course experiment of Drosophila development)
drosophila melanogaster
multiple time points
deseq2
results
development
updated 7.1 years ago by
Michael Love
41k • written 7.1 years ago by
wariobrega
• 0
4
votes
4
replies
1.8k
views
Deseq2 results interpretation
deseq2
multiple factor design
results
7.9 years ago
koeniger
▴ 10
5
votes
6
replies
18k
views
Group comparison in DESeq2
deseq2
results
updated 8.7 years ago by
Michael Love
41k • written 8.7 years ago by
jjinhyoungkim
▴ 20
6
votes
2
replies
4.8k
views
All same padj of contrast results in the DESeq2
deseq2
padj
contrast
results
updated 8.7 years ago by
Michael Love
41k • written 8.7 years ago by
jjinhyoungkim
▴ 20
0
votes
3
replies
2.1k
views
Getting different results with DESeq2
deseq2
results
rstudio
updated 8.7 years ago by
Michael Love
41k • written 8.7 years ago by
Lillyhchen
▴ 10
5
votes
4
replies
3.5k
views
limma multiple rows per gene in output (write.fit)
limma
results
8.9 years ago
Anne
• 0
2
votes
15
replies
3.0k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
9.0 years ago • updated 8.9 years ago
mnaymik
▴ 10
23 results • Page
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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