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Showing :
resultsNames
•
reset
0
votes
4
replies
3.3k
views
DESeq2 extracting results: resultsNames does not show the expected output
deseq2
rnaseq
resultsnames
7.0 years ago • updated 6.9 years ago
zeynep.nenseth
• 0
2
votes
4
replies
4.0k
views
DESeq results names when using interaction terms
DESeq
deseq2
resultsnames
7.8 years ago
akaever
▴ 30
1
vote
7
replies
8.9k
views
DESeq2 resultsNames(dds) not giving the right comparisons?.
deseq2
DESeq2
resultsNames
6.8 years ago • updated 6.7 years ago
davichen
▴ 10
0
votes
2
replies
1.1k
views
Discrepancy in extracting contrasts
deseq2
resultsnames
batch effect
contrast
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
pkachroo
▴ 10
0
votes
3
replies
901
views
Pairwise comparisons for "both between and within subject"experiment using DESeq2
pairwise
deseq2
extracting contrasts
resultsnames
results deseq2
updated 5.4 years ago by
Michael Love
41k • written 5.4 years ago by
Ricardo Rodrigues
• 0
0
votes
5
replies
697
views
Unexpected results
resultsNames
DESeq2
written 3.2 years ago by
efratsh
▴ 10
0
votes
8
replies
1.8k
views
DESeq2 coefficient names
resultsNames
DESeq2
coefficient
3.0 years ago
Jane
▴ 10
0
votes
1
reply
2.9k
views
DESeq2 releveling not changing resultsNames options
deseq2
relevel
resultsNames
multifactorial design
updated 8.1 years ago by
Michael Love
41k • written 8.1 years ago by
rclaire
▴ 20
1
vote
3
replies
975
views
resultsNames(dds) not showing all contrasts
DESeq2
resultsNames
lfcShrink
updated 19 months ago by
ATpoint
★ 4.0k • written 20 months ago by
eve.olszanowski
• 0
4
votes
4
replies
2.0k
views
How to handle the change in resultsNames() for DESeq2 ?
deseq2
resultsnames
multifactorial design
updated 7.9 years ago by
Michael Love
41k • written 7.9 years ago by
Ira
▴ 10
0
votes
1
reply
1.2k
views
resultnames(dds) not giving correct output
deseq2
resultsnames
updated 6.8 years ago by
Michael Love
41k • written 6.8 years ago by
mrigaya.mehra
▴ 10
11 results • Page
1 of 1
Recent ...
Replies
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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