Showing : resultsNames • reset
1
vote
3
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991
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resultsNames(dds) not showing all contrasts
DESeq2 resultsNames lfcShrink
updated 20 months ago by ★ 4.0k • written 20 months ago by • 0
0
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8
replies
1.8k
views
DESeq2 coefficient names
resultsNames DESeq2 coefficient
3.0 years ago Jane ▴ 10
0
votes
5
replies
701
views
Unexpected results
resultsNames DESeq2
written 3.3 years ago by ▴ 10
0
votes
3
replies
904
views
Pairwise comparisons for "both between and within subject"experiment using DESeq2
pairwise deseq2 extracting contrasts resultsnames results deseq2
updated 5.4 years ago by 41k • written 5.4 years ago by • 0
0
votes
2
replies
1.1k
views
Discrepancy in extracting contrasts
deseq2 resultsnames batch effect contrast
updated 6.5 years ago by 41k • written 6.5 years ago by ▴ 10
1
vote
7
replies
9.0k
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DESeq2 resultsNames(dds) not giving the right comparisons?.
deseq2 DESeq2 resultsNames
6.8 years ago • updated 6.7 years ago davichen ▴ 10
0
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1
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1.2k
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resultnames(dds) not giving correct output
deseq2 resultsnames
updated 6.8 years ago by 41k • written 6.8 years ago by ▴ 10
0
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4
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3.3k
views
DESeq2 extracting results: resultsNames does not show the expected output
deseq2 rnaseq resultsnames
7.0 years ago zeynep.nenseth • 0
2
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4
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4.0k
views
DESeq results names when using interaction terms
DESeq deseq2 resultsnames
7.8 years ago akaever ▴ 30
4
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4
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2.0k
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How to handle the change in resultsNames() for DESeq2 ?
deseq2 resultsnames multifactorial design
updated 7.9 years ago by 41k • written 7.9 years ago by ▴ 10
0
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1
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2.9k
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DESeq2 releveling not changing resultsNames options
deseq2 relevel resultsNames multifactorial design
updated 8.2 years ago by 41k • written 8.2 years ago by ▴ 20
11 results • Page 1 of 1
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…
Answer: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
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biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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