Bioconductor Resultsnames

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DESeq2 resultsNames lfcShrink

updated 20 months ago by ATpoint ★ 4.0k • written 20 months ago by eve.olszanowski • 0

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1.8k

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resultsNames DESeq2 coefficient

3.0 years ago Jane ▴ 10

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699

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resultsNames DESeq2

written 3.3 years ago by efratsh ▴ 10

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903

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pairwise deseq2 extracting contrasts resultsnames results deseq2

updated 5.4 years ago by Michael Love 41k • written 5.4 years ago by Ricardo Rodrigues • 0

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1.1k

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deseq2 resultsnames batch effect contrast

updated 6.5 years ago by Michael Love 41k • written 6.5 years ago by pkachroo ▴ 10

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deseq2 DESeq2 resultsNames

6.8 years ago • updated 6.7 years ago davichen ▴ 10

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1.2k

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deseq2 resultsnames

updated 6.8 years ago by Michael Love 41k • written 6.8 years ago by mrigaya.mehra ▴ 10

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3.3k

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deseq2 rnaseq resultsnames

7.0 years ago zeynep.nenseth • 0

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4.0k

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DESeq deseq2 resultsnames

7.8 years ago akaever ▴ 30

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2.0k

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deseq2 resultsnames multifactorial design

updated 7.9 years ago by Michael Love 41k • written 7.9 years ago by Ira ▴ 10

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2.9k

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deseq2 relevel resultsNames multifactorial design

updated 8.1 years ago by Michael Love 41k • written 8.1 years ago by rclaire ▴ 20

11 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

How am i making the data? I am using the DESeq2 output data which I had generated

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

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Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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