Bioconductor Resultsnames

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resultsNames DESeq2 coefficient

3.0 years ago Jane ▴ 10

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deseq2 DESeq2 resultsNames

6.8 years ago • updated 6.7 years ago davichen ▴ 10

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699

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resultsNames DESeq2

written 3.3 years ago by efratsh ▴ 10

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deseq2 rnaseq resultsnames

7.0 years ago zeynep.nenseth • 0

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DESeq deseq2 resultsnames

7.8 years ago akaever ▴ 30

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deseq2 resultsnames multifactorial design

updated 7.9 years ago by Michael Love 41k • written 7.9 years ago by Ira ▴ 10

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903

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pairwise deseq2 extracting contrasts resultsnames results deseq2

updated 5.4 years ago by Michael Love 41k • written 5.4 years ago by Ricardo Rodrigues • 0

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985

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DESeq2 resultsNames lfcShrink

updated 20 months ago by ATpoint ★ 4.0k • written 20 months ago by eve.olszanowski • 0

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deseq2 resultsnames batch effect contrast

updated 6.5 years ago by Michael Love 41k • written 6.5 years ago by pkachroo ▴ 10

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deseq2 resultsnames

updated 6.8 years ago by Michael Love 41k • written 6.8 years ago by mrigaya.mehra ▴ 10

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deseq2 relevel resultsNames multifactorial design

updated 8.1 years ago by Michael Love 41k • written 8.1 years ago by rclaire ▴ 20

11 results • Page 1 of 1

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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…

Answer: get BM error by James W. MacDonald 65k

The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…

Answer: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…

Comment: Different Shrunk Log2FC according with reference by Michael Love 41k

I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

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Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

Comment: Different Shrunk Log2FC according with reference

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

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