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rforproteomics
•
reset
3
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2
replies
1.5k
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DEP: Grouping Samples for missing value imputation
DEP
missing value imputation
proteomics
rforproteomics
6.4 years ago • updated 6.2 years ago
alex.gos90
▴ 10
0
votes
5
replies
3.7k
views
Errors installing RforProteomics and MSnbase packages
RforProteomics
MSnbase
updated 5.3 years ago by
Laurent Gatto
1.6k • written 5.3 years ago by
fgol
▴ 10
1
vote
3
replies
1.3k
views
Running GO analysis via Prostar
prostar
proteomics
rforproteomics
annotationforge
updated 5.9 years ago by
Samuel Wieczorek
▴ 10 • written 5.9 years ago by
lolli.langan
▴ 20
0
votes
6
replies
1.7k
views
Protein quantification by MSnbase package
msnbase
rforproteomics
5.2 years ago
fgol
▴ 10
0
votes
1
reply
1.1k
views
Installation of package RforProteomics had non-zero exit status? ERROR lazy loading failed for package 'RforProteomics'
RforProteomics
updated 4.4 years ago by
James W. MacDonald
65k • written 4.4 years ago by
jb3082
• 0
0
votes
1
reply
1.5k
views
Errors installing RforProteomics
Bioc
package installation
rforproteomics
updated 8.1 years ago by
Laurent Gatto
1.6k • written 8.1 years ago by
sarahgrogan
• 0
2
votes
4
replies
1.4k
views
calling combineFeatures twice causes duplicate row.names
msnbase
duplicate
rforproteomics
updated 6.2 years ago by
Laurent Gatto
1.6k • written 6.2 years ago by
joris.vanhoutven
▴ 10
0
votes
2
replies
882
views
normalize the SILAC light heavy value
RforProteomics
3.5 years ago
yueli7
▴ 20
0
votes
1
reply
587
views
R for Mass Spectrometry: Precursor Scan Number lost when converting .wiff to .mzML?
Proteomics
RforProteomics
ProteomicsWorkflow
Spectra
MassSpectrometryData
updated 9 months ago by
Laurent Gatto
1.6k • written 9 months ago by
mmvar
• 0
1
vote
1
reply
958
views
Errors in installing RforProteomics package
error
RforProteomics
Install
updated 3.4 years ago by
Mike Smith
★ 6.5k • written 3.4 years ago by
Phoebe
• 0
2
votes
1
reply
945
views
Maximum parsimony protein assembly/inference
rforproteomics
proteomics
msnid
msnbase
4.1 years ago
daniel.magnus.bader
▴ 40
0
votes
5
replies
715
views
R for Mass Spectrometry: PSMatch package won't read .mzid file exported from ProteinPilot?
RforProteomics
Proteomics
ProteomicsWorkflow
updated 8 months ago by
Laurent Gatto
1.6k • written 9 months ago by
mmvar
• 0
12 results • Page
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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
Gayatri
• 0
What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…
Comment: DESeq2 output used for PCA plot on R studio
by
ATpoint
★ 4.0k
> Increase variability for mutants: use larger subtractive modifiers I was thinking the same as swbarnes. You're doing some data munging h…
Comment: minfi::read.metharray.exp
by
Basti
▴ 780
This is indeed correct now !
Comment: get BM error
by
Fara
• 0
Thank you for the reply. The examples are these. ENSGACG00000014473 ENSGACG00000015168 ENSGACG00000007529
Comment: get BM error
by
Mike Smith
★ 6.5k
Can you provide an example of the Ensemble IDs you're trying to convert?
Votes
Comment: get BM error
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
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