Bioconductor Rforproteomics

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RforProteomics Proteomics ProteomicsWorkflow

updated 8 months ago by Laurent Gatto 1.6k • written 8 months ago by mmvar • 0

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Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 8 months ago by Laurent Gatto 1.6k • written 8 months ago by mmvar • 0

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error RforProteomics Install

updated 3.4 years ago by Mike Smith ★ 6.5k • written 3.4 years ago by Phoebe • 0

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877

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RforProteomics

3.4 years ago yueli7 ▴ 20

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rforproteomics proteomics msnid msnbase

4.1 years ago daniel.magnus.bader ▴ 40

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1.1k

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RforProteomics

updated 4.4 years ago by James W. MacDonald 65k • written 4.4 years ago by jb3082 • 0

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1.7k

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msnbase rforproteomics

5.2 years ago • updated 5.1 years ago fgol ▴ 10

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3.7k

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RforProteomics MSnbase

updated 5.3 years ago by Laurent Gatto 1.6k • written 5.3 years ago by fgol ▴ 10

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prostar proteomics rforproteomics annotationforge

updated 5.9 years ago by Samuel Wieczorek ▴ 10 • written 5.9 years ago by lolli.langan ▴ 20

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1.4k

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msnbase duplicate rforproteomics

updated 6.2 years ago by Laurent Gatto 1.6k • written 6.2 years ago by joris.vanhoutven ▴ 10

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1.5k

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DEP missing value imputation proteomics rforproteomics

6.4 years ago • updated 6.2 years ago alex.gos90 ▴ 10

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Bioc package installation rforproteomics

updated 8.1 years ago by Laurent Gatto 1.6k • written 8.1 years ago by sarahgrogan • 0

12 results • Page 1 of 1

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Comment: DESeq2 setting significant p-value by Michael Love 41k

It does not resort. Also the dataset and results will have the same row names from object creation throughout the analysis.

Comment: Input Question for deseq.r by ATpoint ★ 4.0k

It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…

Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k

In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …

Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k

```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…

Comment: DESeq2 setting significant p-value by Dev • 0

after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …

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Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

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