Bioconductor Rforproteomics

Showing : rforproteomics • reset

votes

replies

707

views

RforProteomics Proteomics ProteomicsWorkflow

updated 8 months ago by Laurent Gatto 1.6k • written 8 months ago by mmvar • 0

votes

580

views

Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 8 months ago by Laurent Gatto 1.6k • written 8 months ago by mmvar • 0

vote

955

views

error RforProteomics Install

updated 3.4 years ago by Mike Smith ★ 6.5k • written 3.4 years ago by Phoebe • 0

votes

replies

881

views

RforProteomics

3.4 years ago yueli7 ▴ 20

votes

939

views

rforproteomics proteomics msnid msnbase

4.1 years ago daniel.magnus.bader ▴ 40

votes

1.1k

views

RforProteomics

updated 4.4 years ago by James W. MacDonald 65k • written 4.4 years ago by jb3082 • 0

votes

replies

1.7k

views

msnbase rforproteomics

5.2 years ago fgol ▴ 10

votes

replies

3.7k

views

RforProteomics MSnbase

updated 5.3 years ago by Laurent Gatto 1.6k • written 5.3 years ago by fgol ▴ 10

vote

replies

1.3k

views

prostar proteomics rforproteomics annotationforge

updated 5.9 years ago by Samuel Wieczorek ▴ 10 • written 5.9 years ago by lolli.langan ▴ 20

votes

replies

1.5k

views

DEP missing value imputation proteomics rforproteomics

6.4 years ago • updated 6.2 years ago alex.gos90 ▴ 10

votes

replies

1.4k

views

msnbase duplicate rforproteomics

updated 6.2 years ago by Laurent Gatto 1.6k • written 6.2 years ago by joris.vanhoutven ▴ 10

votes

1.5k

views

Bioc package installation rforproteomics

updated 8.1 years ago by Laurent Gatto 1.6k • written 8.1 years ago by sarahgrogan • 0

12 results • Page 1 of 1

Recent ...

Replies

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Thanks Robert!

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Votes

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

Awards • All

Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k