Biostar Rgadem

Showing : rgadem • reset

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598

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software error rgadem caught segfault GADEM

4.7 years ago vgms3311 • 0

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1.3k

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rgadem

updated 5.2 years ago by Martin Morgan 25k • written 5.2 years ago by christopher.chaney • 0

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716

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rGADEM

6.2 years ago emiliomastriani • 0

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973

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rGADEM

updated 6.4 years ago by Charles Joly Beauparlant ▴ 170 • written 6.4 years ago by vinod.acear ▴ 50

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1.1k

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rgadem motiv chipseq jaspar

updated 7.0 years ago by emercier • 0 • written 7.0 years ago by w.jarassier • 0

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1.1k

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rGADEM MotIV MotifDb rGADEM MotIV MotifDb

8.2 years ago Bahar ▴ 10

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998

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rGADEM rGADEM

9.1 years ago Lakshmanan Iyer ▴ 50

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866

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rGADEM MotifDb rGADEM MotifDb

updated 9.2 years ago by José Luis Lavín ▴ 80 • written 9.2 years ago by Paul Shannon ▴ 750

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859

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rGADEM rGADEM

9.3 years ago Alexandra Zerck ▴ 10

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608

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rGADEM rGADEM

10.3 years ago Arnaud Droit ▴ 20

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812

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rGADEM rGADEM

updated 10.4 years ago by Dan Tenenbaum ★ 8.2k • written 10.4 years ago by Dave S ▴ 10

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689

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Transcription rGADEM Transcription rGADEM

10.8 years ago Charles Joly ▴ 10

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872

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Alignment rGADEM MotIV Alignment rGADEM MotIV

10.8 years ago Mercier Eloi ▴ 60

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738

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Alignment rGADEM MotIV Alignment rGADEM MotIV

10.8 years ago Chris Whelan ▴ 60

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1.0k

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rGADEM MotIV rGADEM MotIV

updated 10.8 years ago by Charles Joly Beauparlant ▴ 170 • written 10.8 years ago by mattia pelizzola ▴ 200

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Comment: AssignChromosomeRegion not working in Rstudio 4.2 by Ou, Jianhong ★ 1.3k

Hi Abhilansh, Thank you for trying ChIPpeakAnno for your data. Could you please edit your post again? I am not sure I can follow your desc…

Comment: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o by James W. MacDonald 59k

Please don't add comments onto years-old posts. Instead make a new post.

Comment: strange results from differential methylation analysis using limma by Sean Davis 21k

You should ask a new question, but the short answer is that features such as CpG probes are in rows.

Answer: The results(dds) function in DESeq2 gives Na values for padj by ATpoint ★ 1.2k

Read the manual: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#why-are-some-p-values-set-to-na Or …

Comment: featureCounts: 0% successfully assigned fragments by ATpoint ★ 1.2k

Lack of any details, not appreciated. Anyway, are chromosome identifiers the same between BAM and GTF?

Votes

Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU

C: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o

Comment: Diffbind dba$binding slot finding Chr21 for an MM10 dataset

Answer: Handling NA values in limma's voom design matrix

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