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rgadem
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3
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1.6k
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Problem with rGADEM & MotIV - one matrix consensus after GADEM() and one plot enrichment motif
rgadem
motiv
chipseq
jaspar
updated 8.8 years ago by
emercier
• 0 • written 8.9 years ago by
w.jarassier
• 0
0
votes
4
replies
1.5k
views
occurrence of rGADEM motifs
rGADEM
MotIV
rGADEM
MotIV
updated 12.7 years ago by
Charles Joly Beauparlant
▴ 170 • written 12.7 years ago by
mattia pelizzola
▴ 200
0
votes
2
replies
1.5k
views
rGADEM crash
rGADEM
rGADEM
11.0 years ago
Lakshmanan Iyer
▴ 50
0
votes
1
reply
1.3k
views
ChIPpeakAnno "examplePattern.fa" file
rGADEM
MotifDb
rGADEM
MotifDb
updated 11.1 years ago by
José Luis Lavín
▴ 80 • written 11.1 years ago by
Paul Shannon
▴ 750
0
votes
1
reply
1.2k
views
rGADEM crashes on Ubuntu 10.04 64-bit
rGADEM
rGADEM
updated 12.2 years ago by
Dan Tenenbaum
★ 8.2k • written 12.2 years ago by
Dave S
▴ 10
1
vote
6
replies
1.4k
views
rGADEM not giving desired motif consistently
rGADEM
updated 8.2 years ago by
Charles Joly Beauparlant
▴ 170 • written 8.2 years ago by
vinod.acear
▴ 50
0
votes
1
reply
1.7k
views
rGADEM error retrieving sequences
rgadem
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
christopher.chaney
• 0
0
votes
0
replies
844
views
rGADEM caught segfault
software error
rgadem
caught segfault
GADEM
6.6 years ago • updated 6.5 years ago
vgms3311
• 0
0
votes
0
replies
1.2k
views
occurrence of rGADEM motifs (mattia pelizzola)
Alignment
rGADEM
MotIV
Alignment
rGADEM
MotIV
12.7 years ago
Mercier Eloi
▴ 60
0
votes
1
reply
642
views
Error calling GADEM from rGADEM package
rGADEM
updated 10 months ago by
mohamedrefaat.1.1992
• 0 • written 17 months ago by
Nils.Rother
• 0
0
votes
0
replies
991
views
occurrence of rGADEM motifs (mattia pelizzola)
Alignment
rGADEM
MotIV
Alignment
rGADEM
MotIV
12.7 years ago
Chris Whelan
▴ 60
0
votes
0
replies
993
views
New version of rGADEM - ChIP-Seq, de novo motif discovery
Transcription
rGADEM
Transcription
rGADEM
12.7 years ago
Charles Joly
▴ 10
0
votes
0
replies
887
views
rGADEM crash
rGADEM
rGADEM
12.2 years ago
Arnaud Droit
▴ 20
0
votes
0
replies
1.1k
views
rGADEM: e-Values for reported motifs
rGADEM
rGADEM
11.1 years ago
Alexandra Zerck
▴ 10
0
votes
0
replies
1.4k
views
ChIPpeakAnno
rGADEM
MotIV
MotifDb
rGADEM
MotIV
MotifDb
10.1 years ago
Bahar
▴ 10
0
votes
0
replies
993
views
rGADEM bit calloc error
rGADEM
8.1 years ago
emiliomastriani
• 0
16 results • Page
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Recent ...
Replies
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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