Bioconductor Rgadem

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658

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rGADEM

updated 11 months ago by mohamedrefaat.1.1992 • 0 • written 17 months ago by Nils.Rother • 0

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851

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software error rgadem caught segfault GADEM

6.6 years ago vgms3311 • 0

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1.7k

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rgadem

updated 7.1 years ago by Martin Morgan 25k • written 7.1 years ago by christopher.chaney • 0

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rGADEM

8.2 years ago emiliomastriani • 0

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1.5k

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rGADEM

updated 8.3 years ago by Charles Joly Beauparlant ▴ 170 • written 8.3 years ago by vinod.acear ▴ 50

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1.7k

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rgadem motiv chipseq jaspar

updated 8.9 years ago by emercier • 0 • written 8.9 years ago by w.jarassier • 0

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1.4k

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rGADEM MotIV MotifDb rGADEM MotIV MotifDb

10.1 years ago Bahar ▴ 10

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1.5k

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rGADEM rGADEM

11.1 years ago Lakshmanan Iyer ▴ 50

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1.3k

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rGADEM MotifDb rGADEM MotifDb

updated 11.1 years ago by José Luis Lavín ▴ 80 • written 11.1 years ago by Paul Shannon ▴ 750

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1.2k

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rGADEM rGADEM

11.2 years ago Alexandra Zerck ▴ 10

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898

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rGADEM rGADEM

12.3 years ago Arnaud Droit ▴ 20

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1.2k

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rGADEM rGADEM

updated 12.3 years ago by Dan Tenenbaum ★ 8.2k • written 12.3 years ago by Dave S ▴ 10

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Transcription rGADEM Transcription rGADEM

12.7 years ago Charles Joly ▴ 10

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1.2k

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Alignment rGADEM MotIV Alignment rGADEM MotIV

12.7 years ago Mercier Eloi ▴ 60

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999

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Alignment rGADEM MotIV Alignment rGADEM MotIV

12.7 years ago Chris Whelan ▴ 60

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1.5k

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rGADEM MotIV rGADEM MotIV

updated 12.7 years ago by Charles Joly Beauparlant ▴ 170 • written 12.7 years ago by mattia pelizzola ▴ 200

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Awards • All

Scholar to Peter Hickey ▴ 740