Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
rhdf5
•
reset
0
votes
2
replies
153
views
Error in H5Fopen
rhdf5
Rhdf5lib
kallisto
tximport
5 weeks ago • updated 4 weeks ago
Yijing
• 0
1
vote
1
reply
325
views
Error in h5checktype(). H5Identifier not valid.
rhdf5
rhdf
r
updated 9 weeks ago by
Cynthia
• 0 • written 11 weeks ago by
Nargil
• 0
3
votes
2
replies
206
views
Dataset Column Names in rH5df
h5createDataset
rhdf5
3 months ago
kpalmer
▴ 10
3
votes
3
replies
267
views
Incremental Write
append
rhdf5
3 months ago
kpalmer
▴ 10
2
votes
1
reply
326
views
Read zipped H5AD file directly
rhdf5
updated 4 months ago by
Mike Smith
★ 6.0k • written 4 months ago by
merv
▴ 60
1
vote
1
reply
449
views
Extract only dataframes from AnnData objects
rhdf5
HDF5Array
anndata
SingleCellExperiment
updated 8 months ago by
Peter Hickey
▴ 650 • written 8 months ago by
merv
▴ 60
0
votes
2
replies
1.2k
views
Unable to open hd5 file using rhdf5 but can list contents
hdf5
h5
rhdf5
updated 11 months ago by
Mike Smith
★ 6.0k • written 11 months ago by
dNand
• 0
2
votes
4
replies
976
views
Problem installing 'rhdf5': g++: error: [1]: No such file or directory
rhdf5
updated 17 months ago by
Hervé Pagès
16k • written 17 months ago by
rebeliscu
• 0
1
vote
13
replies
4.6k
views
Compilation fatal error: iostream.h: No such file or directory when installing Rhdf5lib package
rhdf5
Rhdf5lib
22 months ago
charlotte
▴ 10
0
votes
2
replies
708
views
Permission denied when manually installing R packages(Rhdf5lib)
rhdf5
rhdf5filters
Rhdf5lib
22 months ago
charlotte
▴ 10
1
vote
1
reply
633
views
Error in download.file while installing rhdf5lib
rhdf5
rhdf5filters
Rhdf5lib
22 months ago
charlotte
▴ 10
1
vote
8
replies
1.6k
views
Reading HDF5 Files In The Cloud
Rhdf5lib
rhdf5
updated 2.3 years ago by
Mike Smith
★ 6.0k • written 2.3 years ago by
Thomas Sandmann
▴ 80
0
votes
1
reply
625
views
blosc compression with rhdf5
rhdf5
updated 3.0 years ago by
Mike Smith
★ 6.0k • written 3.0 years ago by
hoganajjunk+bioc
• 0
1
vote
2
replies
845
views
Load data with rhdf5
rhdf5
python
updated 3 months ago by
alex46015
• 0 • written 3.1 years ago by
jose.wo
• 0
0
votes
3
replies
990
views
windows tximport fail
tximport
rhdf5
updated 3.8 years ago by
Michael Love
40k • written 3.8 years ago by
rhart
• 0
0
votes
4
replies
1.7k
views
Error in H5Fopen with kallisto .h5 files
tximport
kallisto
rhdf5
4.2 years ago
uso2015
• 0
0
votes
3
replies
3.6k
views
Rhdf5lib install problems
R
bioconductor
rhdf5
biocmanager
3.5
4.5 years ago
cem45
• 0
0
votes
2
replies
582
views
rhdf5 error writing matrix in hdf5 file
rhdf5
updated 4.7 years ago by
Mike Smith
★ 6.0k • written 4.8 years ago by
wolfgang.biener
• 0
0
votes
3
replies
879
views
Rhdf5 C-library out of date
rhdf5
hdf5
updated 5.0 years ago by
Mike Smith
★ 6.0k • written 5.0 years ago by
channsoden
• 0
0
votes
3
replies
907
views
Low level usage of rhdf5
rhdf5
updated 5.1 years ago by
Mike Smith
★ 6.0k • written 5.1 years ago by
rubi
▴ 110
0
votes
1
reply
614
views
Create a soft link in rhdf5
rhdf5
softlink
5.1 years ago
rubi
▴ 110
1
vote
1
reply
1.1k
views
rhdf5 build error undefined symbol: ompi_mpi_cxx_op_intercept
rhdf5
ompi
5.2 years ago
fizwit
• 0
14
votes
10
replies
3.8k
views
HDF5 reading speed
rhdf5
hdf5
updated 5.3 years ago by
Mike Smith
★ 6.0k • written 5.3 years ago by
felicien.meunier
▴ 40
3
votes
3
replies
2.6k
views
Problem installing rhdf5
rhdf5
5.7 years ago
jariani.abb
▴ 10
1
vote
1
reply
1000
views
Contradictory Messages from rhdf5
rhdf5
hdf5
updated 5.8 years ago by
Mike Smith
★ 6.0k • written 6.1 years ago by
Kipper Fletez-Brant
▴ 150
1
vote
1
reply
865
views
Closing hdf5 file leaves open H5I_GENPROP_LST handle behind
rhdf5
updated 5.8 years ago by
Mike Smith
★ 6.0k • written 6.4 years ago by
dariusz.ratman
• 0
8
votes
11
replies
9.1k
views
R: error while reading .h5 files from R using rdhf5 package
rhdf5
r
hdf5
updated 5 weeks ago by
Yijing
• 0 • written 5.9 years ago by
him4u324
▴ 10
0
votes
4
replies
1.8k
views
Problem in extracting a row from matrix in rhdf5
rhdf5
updated 6.0 years ago by
Mike Smith
★ 6.0k • written 6.0 years ago by
filipe
• 0
0
votes
1
reply
1.1k
views
Trouble installing rhdf5 on opensuse
rhdf5
opensuse
6.3 years ago
johannes.gudbrandsson
• 0
0
votes
1
reply
1.3k
views
Bug in rhdf5::h5write?
rhdf5
updated 6.3 years ago by
Mike Smith
★ 6.0k • written 6.3 years ago by
davis
▴ 90
0
votes
1
reply
1.1k
views
rhdf5 installtion fails on Debian 8 due to compilation errors
rhdf5
6.7 years ago
ch.diener
• 0
2
votes
1
reply
975
views
Warnings messages can not we handles/hidden
warning message
warning
R
rhdf5
updated 6.9 years ago by
Martin Morgan
25k • written 6.9 years ago by
matiasb
• 0
1
vote
2
replies
1.4k
views
API for Bioconductor
rhdf5
hdf5
dependencies
updated 6.9 years ago by
Mike Smith
★ 6.0k • written 6.9 years ago by
thabermann
• 0
0
votes
0
replies
745
views
Can we expand the dimensions of dataset infinitely in RHDF5?
RHDF5
7.2 years ago
kunalpurimkbk
• 0
3
votes
6
replies
1.9k
views
hdf5load equivalent for RHDF5
hdf5
rhdf5
hdf
updated 7.2 years ago by
Bernd Fischer
▴ 550 • written 7.2 years ago by
manfredodiporcia
• 0
0
votes
3
replies
1.7k
views
openCyto: compilation failure during installation
opencyto
rhdf5
compilation error
7.4 years ago
gmirkin
• 0
1
vote
2
replies
1.1k
views
rhdf5 H5Dget_create_plist implementation
rhdf5
c
updated 7.5 years ago by
Bernd Fischer
▴ 550 • written 7.5 years ago by
Chris Jewell
• 0
0
votes
2
replies
1.1k
views
rhdf5 installation issue on Windows 64bit
rhdf5
windows
7.6 years ago
cyang227
• 0
1
vote
2
replies
3.9k
views
rhdf5 package fails to install
rhdf5
hdf5
7.6 years ago
trombe.piju
• 0
0
votes
1
reply
1.3k
views
h5ls spits out errors when iterating ONT Fast5 files
rhdf5
updated 7.7 years ago by
Bernd Fischer
▴ 550 • written 7.7 years ago by
David Eccles (gringer)
▴ 30
0
votes
1
reply
1.3k
views
Problem with installation of rhdf5 on R 3.2.0 Mac Yosemite 10.10.4
rhdf5
r
mac
7.8 years ago
ambageo
• 0
0
votes
9
replies
2.8k
views
rhdf5 32-bit unsigned int issue
rhdf5
bug
updated 7.9 years ago by
Bernd Fischer
▴ 550 • written 7.9 years ago by
wrob311
• 0
1
vote
1
reply
3.0k
views
How can I add rows to a dataframe in an HDF5 file using rhdf5?
rhdf5
hdf5
updated 7.9 years ago by
Nathaniel Hayden
▴ 180 • written 7.9 years ago by
serefarikan
• 0
2
votes
2
replies
1.6k
views
Suppressing rhdf5 error messages
rhdf5
hdf5
updated 7.9 years ago by
Bernd Fischer
▴ 550 • written 7.9 years ago by
Mike Smith
★ 6.0k
0
votes
2
replies
1.0k
views
rHDF5 and unimplemented VLEN
rhdf5
updated 8.0 years ago by
Bernd Fischer
▴ 550 • written 8.0 years ago by
stackexchange
• 0
0
votes
4
replies
1.6k
views
rhdf5 segfault on write of large matrix
rhdf5
segfault
8.1 years ago
Kort, Eric
▴ 220
0
votes
2
replies
3.0k
views
Reading Strings from MAT Files using rhdf5
rhdf5
characters
updated 8.2 years ago by
Bernd Fischer
▴ 550 • written 8.2 years ago by
ejb6
• 0
1
vote
2
replies
2.2k
views
rHDF5 problem writing strings in attributes
rhdf5
updated 8.2 years ago by
Bernd Fischer
▴ 550 • written 8.2 years ago by
spencer.mahaffey
• 0
2
votes
1
reply
1.2k
views
rhdf5 segmentation error with vdata
rhdf5
updated 8.2 years ago by
Bernd Fischer
▴ 550 • written 8.2 years ago by
sa.cizmeli
• 0
0
votes
6
replies
2.6k
views
rhdf5 package and arrays in R
array
R
rhdf5
arrays
h5
updated 8.3 years ago by
Nathaniel Hayden
▴ 180 • written 8.3 years ago by
FabioF
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Error: biomaRt has encountered an unexpected server error.
by
Mike Smith
★ 6.0k
Unfortunately, the BioMart LDS functionality have been flaky for a while now e.g. https://support.bioconductor.org/p/9143401/ , https:/…
Comment: Use with_go along with other filters in getBM function
by
Mike Smith
★ 6.0k
Hi @rubbit0, I'm not sure I understand what you're trying to do. Do you have a long list of Ensembl Gene IDs and you're trying to select …
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat
by
Anna
▴ 20
Dear Gordon, these are my metadata. As you see some subject are missing for timepoint 1 Subject Timepoint 1 ID1 Baselin…
Comment: Question on constructing design matrix and defining contrasts for analysis
by
mohammedtoufiq91
▴ 10
Sure, noted.
Comment: Question on constructing design matrix and defining contrasts for analysis
by
mohammedtoufiq91
▴ 10
@gordonsmyth Yes, I realized while re-running through the WGCNA workflow and forget to account for the paired experiment. For general gene …
Votes
DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.
WGCNA coupled with differential expression analysis: question about baseline module detection
WGCNA with paired samples
Comment: Question on constructing design matrix and defining contrasts for analysis
Comment: Question on constructing design matrix and defining contrasts for analysis
Awards
• All
Popular Question
to
Gordon Smyth
47k
Teacher
to
James W. MacDonald
63k
Popular Question
to
Laurent Gatto
1.6k
Popular Question
to
kevin.rue
▴ 320
Popular Question
to
Miss Agnieszka Aleksandra Golicz
▴ 40
Locations
• All
France,
just now
Spain,
12 minutes ago
Netherlands,
12 minutes ago
San Diego,
13 minutes ago
Germany,
16 minutes ago
Traffic: 770 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6