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3.2 years ago • updated 8 months ago
Thomas Sandmann
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Comment: DESeq2 setting significant p-value
by
Dev
•
0
after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format
I have …
Comment: DESeq filtering specific to contrasts
by
Carlin95
•
0
But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…
Comment: Reading huge bismark coverage files using bbseq::read.bismark
by
jacques.imbert
•
0
Hello,
Using nThread = 1L fixed the issue.
Thank you for your time and help.
Comment: Error in champ.load(): The following specified files do not exist
by
Basti
▴
760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
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