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Showing :
rhdf5
•
reset
5
votes
5
replies
415
views
create COMPOUND dataset (2 matrices) with rhdf5?
rhdf5
11 weeks ago • updated 10 weeks ago
baptiste
▴ 20
0
votes
4
replies
571
views
rhdf5: error trying to access files from S3 Cloud from NASA earthaccess
rhdf5
5 months ago • updated 4 months ago
Caio
• 0
0
votes
2
replies
802
views
Error in H5Fopen
rhdf5
Rhdf5lib
kallisto
tximport
11 months ago
Yijing
• 0
1
vote
1
reply
1.2k
views
Error in h5checktype(). H5Identifier not valid.
rhdf5
rhdf
r
updated 12 months ago by
Cynthia
• 0 • written 13 months ago by
Nargil
• 0
3
votes
2
replies
688
views
Dataset Column Names in rH5df
h5createDataset
rhdf5
14 months ago
kpalmer
▴ 10
3
votes
3
replies
813
views
Incremental Write
append
rhdf5
14 months ago
kpalmer
▴ 10
2
votes
1
reply
1.1k
views
Read zipped H5AD file directly
rhdf5
updated 15 months ago by
Mike Smith
★ 6.5k • written 15 months ago by
merv
▴ 120
1
vote
1
reply
1.1k
views
Extract only dataframes from AnnData objects
rhdf5
HDF5Array
anndata
SingleCellExperiment
updated 19 months ago by
Peter Hickey
▴ 740 • written 19 months ago by
merv
▴ 120
1
vote
2
replies
2.9k
views
Unable to open hd5 file using rhdf5 but can list contents
hdf5
h5
rhdf5
updated 21 months ago by
Mike Smith
★ 6.5k • written 21 months ago by
dNand
• 0
2
votes
4
replies
1.6k
views
Problem installing 'rhdf5': g++: error: [1]: No such file or directory
rhdf5
updated 2.3 years ago by
Hervé Pagès
16k • written 2.3 years ago by
rebeliscu
• 0
1
vote
13
replies
6.1k
views
Compilation fatal error: iostream.h: No such file or directory when installing Rhdf5lib package
rhdf5
Rhdf5lib
2.7 years ago
charlotte
▴ 10
0
votes
2
replies
1.0k
views
Permission denied when manually installing R packages(Rhdf5lib)
rhdf5
rhdf5filters
Rhdf5lib
2.7 years ago
charlotte
▴ 10
1
vote
1
reply
1.2k
views
Error in download.file while installing rhdf5lib
rhdf5
rhdf5filters
Rhdf5lib
2.7 years ago
charlotte
▴ 10
2
votes
8
replies
2.3k
views
Reading HDF5 Files In The Cloud
Rhdf5lib
rhdf5
3.2 years ago • updated 8 months ago
Thomas Sandmann
▴ 90
0
votes
1
reply
925
views
blosc compression with rhdf5
rhdf5
updated 3.9 years ago by
Mike Smith
★ 6.5k • written 3.9 years ago by
hoganajjunk+bioc
• 0
1
vote
2
replies
1.3k
views
Load data with rhdf5
rhdf5
python
updated 14 months ago by
alex46015
• 0 • written 4.0 years ago by
jose.wo
• 0
0
votes
3
replies
1.4k
views
windows tximport fail
tximport
rhdf5
updated 4.7 years ago by
Michael Love
41k • written 4.7 years ago by
rhart
• 0
0
votes
4
replies
2.3k
views
Error in H5Fopen with kallisto .h5 files
tximport
kallisto
rhdf5
5.1 years ago
uso2015
• 0
0
votes
3
replies
4.4k
views
Rhdf5lib install problems
R
bioconductor
rhdf5
biocmanager
3.5
5.4 years ago
cem45
• 0
0
votes
2
replies
792
views
rhdf5 error writing matrix in hdf5 file
rhdf5
updated 5.6 years ago by
Mike Smith
★ 6.5k • written 5.7 years ago by
wolfgang.biener
• 0
0
votes
3
replies
1.3k
views
Rhdf5 C-library out of date
rhdf5
hdf5
updated 5.9 years ago by
Mike Smith
★ 6.5k • written 5.9 years ago by
channsoden
• 0
0
votes
3
replies
1.3k
views
Low level usage of rhdf5
rhdf5
updated 6.0 years ago by
Mike Smith
★ 6.5k • written 6.0 years ago by
rubi
▴ 110
0
votes
1
reply
816
views
Create a soft link in rhdf5
rhdf5
softlink
6.0 years ago
rubi
▴ 110
1
vote
1
reply
1.4k
views
rhdf5 build error undefined symbol: ompi_mpi_cxx_op_intercept
rhdf5
ompi
6.1 years ago • updated 6.0 years ago
fizwit
• 0
14
votes
10
replies
4.8k
views
HDF5 reading speed
rhdf5
hdf5
updated 6.2 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
felicien.meunier
▴ 40
3
votes
3
replies
3.1k
views
Problem installing rhdf5
rhdf5
6.5 years ago
jariani.abb
▴ 10
8
votes
11
replies
11k
views
R: error while reading .h5 files from R using rdhf5 package
rhdf5
r
hdf5
updated 11 months ago by
Yijing
• 0 • written 6.8 years ago by
him4u324
▴ 10
0
votes
4
replies
2.2k
views
Problem in extracting a row from matrix in rhdf5
rhdf5
updated 6.9 years ago by
Mike Smith
★ 6.5k • written 6.9 years ago by
filipe
• 0
1
vote
1
reply
1.3k
views
Contradictory Messages from rhdf5
rhdf5
hdf5
updated 6.7 years ago by
Mike Smith
★ 6.5k • written 7.0 years ago by
Kipper Fletez-Brant
▴ 150
0
votes
1
reply
1.4k
views
Trouble installing rhdf5 on opensuse
rhdf5
opensuse
7.2 years ago
johannes.gudbrandsson
• 0
0
votes
1
reply
1.6k
views
Bug in rhdf5::h5write?
rhdf5
updated 7.2 years ago by
Mike Smith
★ 6.5k • written 7.2 years ago by
davis
▴ 90
1
vote
1
reply
1.1k
views
Closing hdf5 file leaves open H5I_GENPROP_LST handle behind
rhdf5
updated 6.7 years ago by
Mike Smith
★ 6.5k • written 7.3 years ago by
dariusz.ratman
• 0
0
votes
1
reply
1.3k
views
rhdf5 installtion fails on Debian 8 due to compilation errors
rhdf5
7.6 years ago
ch.diener
• 0
1
vote
2
replies
1.7k
views
API for Bioconductor
rhdf5
hdf5
dependencies
updated 7.8 years ago by
Mike Smith
★ 6.5k • written 7.8 years ago by
thabermann
• 0
2
votes
1
reply
1.2k
views
Warnings messages can not we handles/hidden
warning message
warning
R
rhdf5
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
matiasb
• 0
0
votes
0
replies
924
views
Can we expand the dimensions of dataset infinitely in RHDF5?
RHDF5
8.1 years ago
kunalpurimkbk
• 0
3
votes
6
replies
2.3k
views
hdf5load equivalent for RHDF5
hdf5
rhdf5
hdf
updated 8.1 years ago by
Bernd Fischer
▴ 550 • written 8.1 years ago by
manfredodiporcia
• 0
0
votes
3
replies
2.0k
views
openCyto: compilation failure during installation
opencyto
rhdf5
compilation error
8.3 years ago
gmirkin
• 0
1
vote
2
replies
1.4k
views
rhdf5 H5Dget_create_plist implementation
rhdf5
c
updated 8.4 years ago by
Bernd Fischer
▴ 550 • written 8.4 years ago by
Chris Jewell
• 0
0
votes
2
replies
1.3k
views
rhdf5 installation issue on Windows 64bit
rhdf5
windows
8.5 years ago
cyang227
• 0
1
vote
2
replies
4.8k
views
rhdf5 package fails to install
rhdf5
hdf5
8.5 years ago
trombe.piju
• 0
0
votes
1
reply
1.5k
views
h5ls spits out errors when iterating ONT Fast5 files
rhdf5
updated 8.6 years ago by
Bernd Fischer
▴ 550 • written 8.6 years ago by
David Eccles (gringer)
▴ 30
0
votes
1
reply
1.6k
views
Problem with installation of rhdf5 on R 3.2.0 Mac Yosemite 10.10.4
rhdf5
r
mac
8.7 years ago
ambageo
• 0
1
vote
1
reply
3.4k
views
How can I add rows to a dataframe in an HDF5 file using rhdf5?
rhdf5
hdf5
updated 8.8 years ago by
Nathaniel Hayden
▴ 180 • written 8.8 years ago by
serefarikan
• 0
0
votes
9
replies
3.4k
views
rhdf5 32-bit unsigned int issue
rhdf5
bug
updated 8.8 years ago by
Bernd Fischer
▴ 550 • written 8.8 years ago by
wrob311
• 0
2
votes
2
replies
2.1k
views
Suppressing rhdf5 error messages
rhdf5
hdf5
updated 8.8 years ago by
Bernd Fischer
▴ 550 • written 8.8 years ago by
Mike Smith
★ 6.5k
0
votes
2
replies
1.2k
views
rHDF5 and unimplemented VLEN
rhdf5
updated 8.8 years ago by
Bernd Fischer
▴ 550 • written 8.8 years ago by
stackexchange
• 0
0
votes
4
replies
1.9k
views
rhdf5 segfault on write of large matrix
rhdf5
segfault
9.0 years ago
Kort, Eric
▴ 220
0
votes
2
replies
3.5k
views
Reading Strings from MAT Files using rhdf5
rhdf5
characters
updated 9.1 years ago by
Bernd Fischer
▴ 550 • written 9.1 years ago by
ejb6
• 0
1
vote
2
replies
2.5k
views
rHDF5 problem writing strings in attributes
rhdf5
updated 9.1 years ago by
Bernd Fischer
▴ 550 • written 9.1 years ago by
spencer.mahaffey
• 0
50 results • Page
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Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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