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riboseqr
•
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2
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3
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1.1k
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Problem in reading .bam files (aligned to transcriptome) with ribofileCR function
R
riboseqr
ribosome profiling
6.2 years ago
bsad
• 0
1
vote
3
replies
1.6k
views
RiboSeqR package input file format
riboSeqR
updated 9.5 years ago by
Thomas J Hardcastle
▴ 180 • written 9.5 years ago by
Laura.Fancello
• 0
0
votes
3
replies
1.4k
views
Error in frameCounting using riboSeqR
riboseq
R
riboseqr
6.7 years ago
yingyingguo0228
• 0
1
vote
3
replies
1.2k
views
error in loading Riboseq
software error
riboseqr
8.5 years ago
yyu
• 0
0
votes
2
replies
1.6k
views
error in callingFrames : riboSeqR
R
riboseqr
ribosome profiling
8.5 years ago
ohtack9
• 0
1
vote
2
replies
1.6k
views
error in frameCounting in riboSeqR
riboseqr
ribosome profiling
updated 8.1 years ago by
Thomas J Hardcastle
▴ 180 • written 8.2 years ago by
alper.celik
• 0
0
votes
2
replies
923
views
aroundPromoter function in RiboSeqR gives error
riboseqr
5.5 years ago
amir.mahboubi.79
• 0
0
votes
1
reply
1.1k
views
riboSeqR: criteria used to determine reading frames
riboSeqR
updated 9.1 years ago by
Thomas J Hardcastle
▴ 180 • written 9.1 years ago by
antonvila.s
• 0
0
votes
1
reply
1.1k
views
riboSeqR: plotTranscript function not showing coverage
riboseqr
updated 9.1 years ago by
Thomas J Hardcastle
▴ 180 • written 9.1 years ago by
antonvila.s
• 0
0
votes
1
reply
1.0k
views
riboSeqR: plotTranscript error
riboSeqR
updated 9.0 years ago by
Thomas J Hardcastle
▴ 180 • written 9.0 years ago by
antonvila.s
• 0
0
votes
1
reply
1.1k
views
riboSeqR: legend in plotFS
riboseqr
updated 9.0 years ago by
Thomas J Hardcastle
▴ 180 • written 9.0 years ago by
antonvila.s
• 0
0
votes
1
reply
533
views
riboSeqR readRibodata fail in IRanges
riboSeqR
4.6 years ago
Hui.Pan
• 0
0
votes
0
replies
922
views
legend in plotFS
riboseqr
9.0 years ago
antonvila.s
• 0
0
votes
0
replies
917
views
riboSeqR: questions on plotTranscript function
riboseqr
9.1 years ago
antonvila.s
• 0
0
votes
0
replies
1.3k
views
riboSeqR: interpret plots generated by plotTranscript function
riboSeqR
plotTranscript function
9.5 years ago
Laura.Fancello
• 0
0
votes
0
replies
686
views
package ‘riboSeqR’ is not available for this version of R
Bioconductor
riboSeqR
11 months ago
Javier
• 0
0
votes
0
replies
468
views
Reference span vs. width of read in riboseqR
riboSeqR
4.0 years ago
ni2239
• 0
1
vote
0
replies
1.6k
views
Job:
PhD Student in Computational Biology
differential gene expression
rnaseq
riboseqr
computational biology
Job
8.6 years ago
Bernd Fischer
▴ 550
18 results • Page
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Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
ATpoint
★ 4.0k
As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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