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riboseqr
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2
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3
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1.1k
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Problem in reading .bam files (aligned to transcriptome) with ribofileCR function
R
riboseqr
ribosome profiling
6.2 years ago
bsad
• 0
1
vote
3
replies
1.2k
views
error in loading Riboseq
software error
riboseqr
8.5 years ago
yyu
• 0
1
vote
3
replies
1.6k
views
RiboSeqR package input file format
riboSeqR
updated 9.6 years ago by
Thomas J Hardcastle
▴ 180 • written 9.6 years ago by
Laura.Fancello
• 0
1
vote
2
replies
1.6k
views
error in frameCounting in riboSeqR
riboseqr
ribosome profiling
updated 8.1 years ago by
Thomas J Hardcastle
▴ 180 • written 8.2 years ago by
alper.celik
• 0
1
vote
0
replies
1.6k
views
Job:
PhD Student in Computational Biology
differential gene expression
rnaseq
riboseqr
computational biology
Job
8.6 years ago
Bernd Fischer
▴ 550
0
votes
0
replies
927
views
legend in plotFS
riboseqr
9.0 years ago
antonvila.s
• 0
0
votes
1
reply
1.1k
views
riboSeqR: legend in plotFS
riboseqr
updated 9.0 years ago by
Thomas J Hardcastle
▴ 180 • written 9.0 years ago by
antonvila.s
• 0
0
votes
2
replies
1.6k
views
error in callingFrames : riboSeqR
R
riboseqr
ribosome profiling
8.5 years ago
ohtack9
• 0
0
votes
3
replies
1.4k
views
Error in frameCounting using riboSeqR
riboseq
R
riboseqr
6.7 years ago
yingyingguo0228
• 0
0
votes
2
replies
923
views
aroundPromoter function in RiboSeqR gives error
riboseqr
5.5 years ago
amir.mahboubi.79
• 0
0
votes
1
reply
535
views
riboSeqR readRibodata fail in IRanges
riboSeqR
4.6 years ago
Hui.Pan
• 0
0
votes
0
replies
469
views
Reference span vs. width of read in riboseqR
riboSeqR
4.0 years ago
ni2239
• 0
0
votes
1
reply
1.2k
views
riboSeqR: criteria used to determine reading frames
riboSeqR
updated 9.2 years ago by
Thomas J Hardcastle
▴ 180 • written 9.2 years ago by
antonvila.s
• 0
0
votes
0
replies
689
views
package ‘riboSeqR’ is not available for this version of R
Bioconductor
riboSeqR
12 months ago
Javier
• 0
0
votes
1
reply
1.1k
views
riboSeqR: plotTranscript function not showing coverage
riboseqr
updated 9.2 years ago by
Thomas J Hardcastle
▴ 180 • written 9.2 years ago by
antonvila.s
• 0
0
votes
0
replies
1.3k
views
riboSeqR: interpret plots generated by plotTranscript function
riboSeqR
plotTranscript function
9.5 years ago
Laura.Fancello
• 0
0
votes
0
replies
919
views
riboSeqR: questions on plotTranscript function
riboseqr
9.1 years ago
antonvila.s
• 0
0
votes
1
reply
1.0k
views
riboSeqR: plotTranscript error
riboSeqR
updated 9.1 years ago by
Thomas J Hardcastle
▴ 180 • written 9.1 years ago by
antonvila.s
• 0
18 results • Page
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Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
Gayatri
• 0
What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…
Comment: DESeq2 output used for PCA plot on R studio
by
ATpoint
★ 4.0k
> Increase variability for mutants: use larger subtractive modifiers I was thinking the same as swbarnes. You're doing some data munging h…
Votes
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
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