Biostar Rice

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eigengenes limma biosvd rice

3.8 years ago ravisaroch • 0

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biomart bioconductor rice

4.3 years ago Didi ▴ 10

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rice cytoband circlize ggbio ideogram

5.6 years ago Didi ▴ 10

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biomart gramene rice

updated 6.3 years ago by Thomas Maurel ▴ 790 • written 6.3 years ago by maialiaeb • 0

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Comment: athPkgBuilder data source :missing probesets by nicklesteele532 • 0

> >>> > >>> How to handle the one probeset to multiple locus mappings? I can > >think 3 > >>> possible solutions: > >>> 1. pick the "best" …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

> sum(width(gr_toexclude)) [1] 2713499861 I excluded everything which was not locus. If small rna locus is from 2000 to 4000 and next locu…

Comment: Why in Bioconductor community people rarely upvote questions? by Hervé Pagès 16k

BTW I fail to see how the lack of upvotes to a question would be discouraging as long as you get a good answer. OTOH I can see how failing …

Answer: DESeq2 and heatmap for multiple comparisons by swbarnes2 ★ 1.2k

If you want to know what genes are different between lesion and treated, compare them to each other.

Comment: Why in Bioconductor community people rarely upvote questions? by Gordon Smyth 47k

I looked at the responses to your posts because you said that you felt discouraged.

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Answer: Doubts about manipulation and annotation of microarray files deposited at GEO

C: Batch correction in DESeq2

Comment: Strand information in a GAlignmentsList object derived from strand-specific pair

A: Calculate S/N ratios from apeglm for GSEA

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