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Showing :
ringo
•
reset
0
votes
2
replies
1.1k
views
Nimblegen / Ringo / Preprocess error: inherits(myRG, "RGList") is not TRUE
Preprocessing
Homo sapiens
probe
Ringo
Preprocessing
Homo sapiens
probe
Ringo
14.9 years ago
JEAN-YVES SGRO
▴ 20
0
votes
4
replies
1.6k
views
Using package Ringo to analyze Agilent Chip on chip array
Ringo
Ringo
12.0 years ago
Gabriel Wajnberg
▴ 60
1
vote
2
replies
2.4k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase
convert
sva
ringo
arrayqualitymetrics
updated 8.1 years ago by
Gordon Smyth
50k • written 8.1 years ago by
chris.rock
• 0
0
votes
3
replies
1.3k
views
Error using getMeans function in Ringo/Starr
Yeast
probe
Ringo
Yeast
probe
Ringo
14.0 years ago
Noah Dowell
▴ 410
0
votes
2
replies
1.3k
views
Advice for ChIPchip-Analysis
Ringo
Ringo
14.7 years ago
Karin Zimmermann
▴ 20
0
votes
4
replies
1.4k
views
using smoothX in Ringo
probe
Ringo
probe
Ringo
updated 13.7 years ago by
Joern Toedling
▴ 450 • written 13.7 years ago by
Elizabeth Ashley
▴ 50
0
votes
2
replies
1.2k
views
Quantile normalization in Ringo package
Ringo
Ringo
updated 13.6 years ago by
Joern Toedling
▴ 450 • written 13.6 years ago by
Mohamed Lajnef
▴ 250
0
votes
2
replies
1.1k
views
Problem with Ringo
Ringo
Ringo
updated 14.7 years ago by
Wolfgang Huber
★ 13k • written 14.7 years ago by
Hari Easwaran
▴ 240
0
votes
1
reply
1.4k
views
Ringo Plots Only Partially Made
Ringo
affy
tilingarray
plot
starr
8.8 years ago
bruce.moran
▴ 30
0
votes
4
replies
1.4k
views
Ringo - finding enriched regions
Ringo
Ringo
updated 14.5 years ago by
Joern Toedling
▴ 450 • written 14.5 years ago by
Hans-Ulrich Klein
▴ 330
0
votes
1
reply
927
views
Ringo/Starr getProfiles function
biomaRt
Ringo
Starr
biomaRt
Ringo
Starr
updated 14.4 years ago by
Wolfgang Huber
★ 13k • written 14.4 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
961
views
Error using Ringos readNimblegen
Ringo
Ringo
updated 15.9 years ago by
Joern Toedling
▴ 730 • written 15.9 years ago by
Morten Hansen
▴ 10
0
votes
1
reply
1.1k
views
Question about RINGO and follow up analysis
Ringo
Ringo
updated 14.2 years ago by
Joern Toedling
▴ 450 • written 14.2 years ago by
Dr. Viviana Menzel
▴ 10
0
votes
2
replies
1.1k
views
retrieveGenomicFeatureAnnotation.R file supplied with Ringo
biomaRt
Ringo
biomaRt
Ringo
updated 14.1 years ago by
Joern Toedling
▴ 450 • written 14.1 years ago by
Paul Geeleher
★ 1.3k
0
votes
2
replies
1.5k
views
Nimblegen CGH ringo to snapCGH
CGH
snapCGH
Ringo
CGH
snapCGH
Ringo
updated 14.0 years ago by
Joern Toedling
▴ 450 • written 14.0 years ago by
Chris Fenton
▴ 80
0
votes
1
reply
962
views
Ringo and dye swaps
Ringo
Ringo
updated 13.7 years ago by
Joern Toedling
▴ 450 • written 13.7 years ago by
jbethune
▴ 10
0
votes
3
replies
1.2k
views
Ringo: Error in preprocess() with R-2.7.0, but not with R-2.5.0
probe
annotate
geneplotter
affy
vsn
Ringo
probe
annotate
geneplotter
affy
vsn
Ringo
updated 15.8 years ago by
Joern Toedling
▴ 730 • written 15.8 years ago by
Ulrike Goebel
▴ 110
0
votes
1
reply
1.1k
views
Ringo for Nimblegen ChIP-chip data in GEO
Normalization
Ringo
Normalization
Ringo
updated 13.5 years ago by
Wolfgang Huber
★ 13k • written 13.5 years ago by
Yong Li
▴ 190
0
votes
2
replies
1.6k
views
Ringo install fails on R 2.8.0
Ringo
Ringo
updated 15.4 years ago by
laurent
▴ 140 • written 15.4 years ago by
Mikko Arvas
▴ 90
0
votes
1
reply
1.3k
views
vsn normalization in Ringo package
Normalization
vsn
Ringo
Normalization
vsn
Ringo
updated 9.7 years ago by
Joern Toedling
▴ 10 • written 9.7 years ago by
Guest User
★ 13k
0
votes
4
replies
1.2k
views
Two color Nucleosomes ChIP-ChIP data analysis using Ringo package.
limma
ringo
starr
8.7 years ago
ashubiochem
• 0
2
votes
1
reply
1.1k
views
Ringo File Opening Error
Ringo
updated 8.6 years ago by
Dan Tenenbaum
★ 8.2k • written 8.6 years ago by
gauravgunjal
• 0
0
votes
4
replies
1.3k
views
Missing Autocorrelation in Ringo
Annotation
Cancer
Ringo
Annotation
Cancer
Ringo
updated 14.8 years ago by
Joern Toedling
▴ 450 • written 14.8 years ago by
Torsten Waldminghaus
▴ 80
0
votes
1
reply
1.0k
views
Missing Autocorrelation in Ringo
probe
Ringo
probe
Ringo
updated 14.8 years ago by
Joern Toedling
▴ 450 • written 14.8 years ago by
Torsten Waldminghaus
▴ 80
0
votes
4
replies
1.2k
views
Ringo package: error using computeRunningMedians function
Ringo
Ringo
updated 14.6 years ago by
Joern Toedling
▴ 450 • written 14.6 years ago by
Diego Villar
▴ 40
0
votes
0
replies
1.0k
views
Ringo/Starr genomeAnno Object Tips
Annotation
biomaRt
Ringo
Annotation
biomaRt
Ringo
14.3 years ago
Noah Dowell
▴ 410
0
votes
0
replies
1.2k
views
Using Ringo
Normalization
vsn
convert
Ringo
Normalization
vsn
convert
Ringo
16.7 years ago
Joern Toedling
▴ 730
0
votes
0
replies
950
views
Ringo package: error using computeRunningMedians function
Ringo
Ringo
14.6 years ago
Joern Toedling
▴ 450
0
votes
0
replies
1.1k
views
Ringo package: biological replicate correlation within cher (chip-enriched region)
Ringo
Ringo
14.6 years ago
Diego Villar
▴ 40
0
votes
0
replies
1.1k
views
analysing NimbleGen CGH for CNV
aCGH
probe
aCGH
snapCGH
Ringo
aCGH
probe
aCGH
snapCGH
Ringo
13.4 years ago
Adeolu Adewoye
▴ 40
0
votes
0
replies
983
views
Normalizing together Nimblegen arrays with different designs
Normalization
probe
limma
Ringo
Normalization
probe
limma
Ringo
13.0 years ago
Wlasiuk Battagliotti, Gabriela - wlasiuk
▴ 20
0
votes
0
replies
940
views
using Ringo and ACME package for NimbleGen MeDIP-chip data
Ringo
ACME
Ringo
ACME
12.9 years ago
Adeolu Adewoye
▴ 40
32 results • Page
1 of 1
Recent ...
Replies
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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