Showing : ringo • reset
0
votes
4
replies
1.3k
views
Missing Autocorrelation in Ringo
Annotation Cancer Ringo Annotation Cancer Ringo
updated 14.8 years ago by ▴ 450 • written 14.8 years ago by ▴ 80
0
votes
4
replies
1.4k
views
using smoothX in Ringo
probe Ringo probe Ringo
updated 13.7 years ago by ▴ 450 • written 13.7 years ago by ▴ 50
0
votes
4
replies
1.6k
views
Using package Ringo to analyze Agilent Chip on chip array
Ringo Ringo
12.0 years ago Gabriel Wajnberg ▴ 60
0
votes
4
replies
1.4k
views
Ringo - finding enriched regions
Ringo Ringo
updated 14.5 years ago by ▴ 450 • written 14.5 years ago by ▴ 330
0
votes
4
replies
1.2k
views
Two color Nucleosomes ChIP-ChIP data analysis using Ringo package.
limma ringo starr
8.7 years ago ashubiochem • 0
0
votes
4
replies
1.2k
views
Ringo package: error using computeRunningMedians function
Ringo Ringo
updated 14.7 years ago by ▴ 450 • written 14.7 years ago by ▴ 40
0
votes
3
replies
1.2k
views
Ringo: Error in preprocess() with R-2.7.0, but not with R-2.5.0
probe annotate geneplotter affy vsn Ringo probe annotate geneplotter affy vsn Ringo
updated 15.8 years ago by ▴ 730 • written 15.8 years ago by ▴ 110
0
votes
3
replies
1.3k
views
Error using getMeans function in Ringo/Starr
Yeast probe Ringo Yeast probe Ringo
14.0 years ago Noah Dowell ▴ 410
1
vote
2
replies
2.4k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.1 years ago by 50k • written 8.1 years ago by • 0
0
votes
2
replies
1.4k
views
Advice for ChIPchip-Analysis
Ringo Ringo
14.8 years ago Karin Zimmermann ▴ 20
0
votes
2
replies
1.1k
views
Problem with Ringo
Ringo Ringo
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 240
0
votes
2
replies
1.1k
views
retrieveGenomicFeatureAnnotation.R file supplied with Ringo
biomaRt Ringo biomaRt Ringo
updated 14.2 years ago by ▴ 450 • written 14.2 years ago by ★ 1.3k
0
votes
2
replies
1.5k
views
Nimblegen CGH ringo to snapCGH
CGH snapCGH Ringo CGH snapCGH Ringo
updated 14.0 years ago by ▴ 450 • written 14.0 years ago by ▴ 80
0
votes
2
replies
1.6k
views
Ringo install fails on R 2.8.0
Ringo Ringo
updated 15.5 years ago by ▴ 140 • written 15.5 years ago by ▴ 90
0
votes
2
replies
1.2k
views
Quantile normalization in Ringo package
Ringo Ringo
updated 13.6 years ago by ▴ 450 • written 13.6 years ago by ▴ 250
0
votes
2
replies
1.1k
views
Nimblegen / Ringo / Preprocess error: inherits(myRG, "RGList") is not TRUE
Preprocessing Homo sapiens probe Ringo Preprocessing Homo sapiens probe Ringo
14.9 years ago JEAN-YVES SGRO ▴ 20
0
votes
1
reply
966
views
Error using Ringos readNimblegen
Ringo Ringo
updated 15.9 years ago by ▴ 730 • written 15.9 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Question about RINGO and follow up analysis
Ringo Ringo
updated 14.3 years ago by ▴ 450 • written 14.3 years ago by ▴ 10
0
votes
1
reply
1.0k
views
Missing Autocorrelation in Ringo
probe Ringo probe Ringo
updated 14.8 years ago by ▴ 450 • written 14.8 years ago by ▴ 80
0
votes
1
reply
1.1k
views
Ringo for Nimblegen ChIP-chip data in GEO
Normalization Ringo Normalization Ringo
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ▴ 190
0
votes
1
reply
967
views
Ringo and dye swaps
Ringo Ringo
updated 13.7 years ago by ▴ 450 • written 13.7 years ago by ▴ 10
2
votes
1
reply
1.1k
views
Ringo File Opening Error
Ringo
updated 8.6 years ago by ★ 8.2k • written 8.6 years ago by • 0
0
votes
1
reply
1.4k
views
Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
8.8 years ago bruce.moran ▴ 30
0
votes
1
reply
1.3k
views
vsn normalization in Ringo package
Normalization vsn Ringo Normalization vsn Ringo
updated 9.7 years ago by ▴ 10 • written 9.8 years ago by ★ 13k
0
votes
1
reply
927
views
Ringo/Starr getProfiles function
biomaRt Ringo Starr biomaRt Ringo Starr
updated 14.4 years ago by ★ 13k • written 14.4 years ago by ▴ 410
0
votes
0
replies
1.0k
views
Ringo/Starr genomeAnno Object Tips
Annotation biomaRt Ringo Annotation biomaRt Ringo
14.3 years ago Noah Dowell ▴ 410
0
votes
0
replies
1.2k
views
Using Ringo
Normalization vsn convert Ringo Normalization vsn convert Ringo
16.7 years ago Joern Toedling ▴ 730
0
votes
0
replies
951
views
Ringo package: error using computeRunningMedians function
Ringo Ringo
14.7 years ago Joern Toedling ▴ 450
0
votes
0
replies
1.1k
views
Ringo package: biological replicate correlation within cher (chip-enriched region)
Ringo Ringo
14.6 years ago Diego Villar ▴ 40
0
votes
0
replies
1.1k
views
analysing NimbleGen CGH for CNV
aCGH probe aCGH snapCGH Ringo aCGH probe aCGH snapCGH Ringo
13.4 years ago Adeolu Adewoye ▴ 40
0
votes
0
replies
986
views
Normalizing together Nimblegen arrays with different designs
Normalization probe limma Ringo Normalization probe limma Ringo
13.1 years ago Wlasiuk Battagliotti, Gabriela - wlasiuk ▴ 20
0
votes
0
replies
943
views
using Ringo and ACME package for NimbleGen MeDIP-chip data
Ringo ACME Ringo ACME
12.9 years ago Adeolu Adewoye ▴ 40
32 results • Page 1 of 1
Recent ...
Replies
Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Awards • All
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Popular Question to Bine ▴ 40
Locations • All
China, just now
EMBL Heidelberg, 6 minutes ago
South Korea, 15 minutes ago
France, 17 minutes ago
Egypt, 19 minutes ago
Traffic: 939 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6