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rle
•
reset
1
vote
1
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967
views
deseq2 RLE normalization
RLE
normalization
deseq2
updated 13 months ago by
ATpoint
★ 4.0k • written 13 months ago by
SH
• 0
0
votes
1
reply
830
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 3.9 years ago by
Aaron Lun
★ 28k • written 3.9 years ago by
lklei001
• 0
0
votes
1
reply
1.7k
views
RLE plot of DESeq2 normalisation / extract matrix of normalised counts from DESeqDataSet
deseq2
RLE
updated 4.2 years ago by
Michael Love
41k • written 4.2 years ago by
f_pardow
• 0
0
votes
2
replies
1.2k
views
Error: invalid class "VRanges" object
variantannotation
VRanges
R
Rle
updated 5.8 years ago by
Valerie Obenchain
★ 6.8k • written 5.8 years ago by
Jayendra Shinde
• 0
0
votes
0
replies
958
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges
s4vectors
rle
rlelist
5.8 years ago
endrebak85
▴ 40
1
vote
1
reply
3.0k
views
What does the relative-log expression normalization mean in the deseq2 wrapper function ?
rle
deseq2
normalization
updated 5.9 years ago by
Michael Love
41k • written 5.9 years ago by
Aurora
▴ 20
1
vote
1
reply
1.1k
views
Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle
Big data
coverageByTranscript
6.0 years ago
hauken_heyken
▴ 80
7
votes
4
replies
1.6k
views
From RleList to RleArray
delayedarray
rlelist
rle
updated 6.5 years ago by
Peter Hickey
▴ 740 • written 6.5 years ago by
davide risso
▴ 950
2
votes
4
replies
1.4k
views
Generic functions for DataFrames of Rle objects ?
DataFrame
Rle
generic
expression table
updated 9 months ago by
Hervé Pagès
16k • written 6.9 years ago by
Charles Plessy
▴ 180
0
votes
3
replies
1.5k
views
Efficiently construct GRanges/IRanges from Rle vector
Rle
granges
iranges
7.6 years ago
my4
▴ 10
0
votes
1
reply
1.6k
views
Efficient coverage calculation with RleList and GRanges
granges
Rle
coverage
View
mean
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
Christian Ruckert
▴ 170
6
votes
3
replies
2.4k
views
how does coverage() works
biostrings
coverage
rle
iranges
7.9 years ago
likeeatingpizza
▴ 10
0
votes
1
reply
1.4k
views
extract RLE normalized table
rle
normalization
table
updated 8.5 years ago by
Steve Lianoglou
★ 13k • written 8.5 years ago by
aiko
• 0
3
votes
7
replies
2.0k
views
Add up RLEs that are in lists?
RLE
GenomicFeatures
rnaseq
updated 9.0 years ago by
Hervé Pagès
16k • written 9.0 years ago by
gen
▴ 30
2
votes
6
replies
2.8k
views
Shrink or Expand RLE
RLE
iranges
granges
coverage
updated 9.1 years ago by
Martin Morgan
25k • written 9.1 years ago by
gen
▴ 30
2
votes
4
replies
1.8k
views
summing integer RLE
rle
list
irange
grangeslist
updated 9.1 years ago by
Chris Seidel
▴ 80 • written 9.1 years ago by
gen
▴ 30
1
vote
2
replies
1.1k
views
Summary statistics of RleListViews object
rle
Views
9.2 years ago
Sean Davis
21k
2
votes
5
replies
1.4k
views
making a RleViewsList object gets slow with many chromosomes
views
iranges
rle
9.2 years ago
Janet Young
▴ 740
1
vote
1
reply
2.2k
views
Computing NUSE and RLE scores
affyPLM
RLE
NUSE
updated 9.2 years ago by
Sean Davis
21k • written 9.2 years ago by
beverly893
▴ 10
0
votes
2
replies
1.1k
views
boxplot on an Rle object?
Rle
boxplot
9.2 years ago
Johannes Rainer
★ 2.0k
20 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
I am not sure how your comment helps here?
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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