Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
rle
•
reset
1
vote
1
reply
949
views
deseq2 RLE normalization
RLE
normalization
deseq2
updated 13 months ago by
ATpoint
★ 4.0k • written 13 months ago by
SH
• 0
0
votes
1
reply
823
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 3.9 years ago by
Aaron Lun
★ 28k • written 3.9 years ago by
lklei001
• 0
0
votes
1
reply
1.7k
views
RLE plot of DESeq2 normalisation / extract matrix of normalised counts from DESeqDataSet
deseq2
RLE
updated 4.2 years ago by
Michael Love
41k • written 4.2 years ago by
f_pardow
• 0
0
votes
2
replies
1.2k
views
Error: invalid class "VRanges" object
variantannotation
VRanges
R
Rle
updated 5.8 years ago by
Valerie Obenchain
★ 6.8k • written 5.8 years ago by
Jayendra Shinde
• 0
0
votes
0
replies
953
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges
s4vectors
rle
rlelist
5.8 years ago
endrebak85
▴ 40
1
vote
1
reply
3.0k
views
What does the relative-log expression normalization mean in the deseq2 wrapper function ?
rle
deseq2
normalization
updated 5.9 years ago by
Michael Love
41k • written 5.9 years ago by
Aurora
▴ 20
1
vote
1
reply
1.1k
views
Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle
Big data
coverageByTranscript
6.0 years ago
hauken_heyken
▴ 80
7
votes
4
replies
1.6k
views
From RleList to RleArray
delayedarray
rlelist
rle
updated 6.5 years ago by
Peter Hickey
▴ 740 • written 6.5 years ago by
davide risso
▴ 950
2
votes
4
replies
1.4k
views
Generic functions for DataFrames of Rle objects ?
DataFrame
Rle
generic
expression table
updated 9 months ago by
Hervé Pagès
16k • written 6.9 years ago by
Charles Plessy
▴ 180
0
votes
3
replies
1.5k
views
Efficiently construct GRanges/IRanges from Rle vector
Rle
granges
iranges
7.5 years ago
my4
▴ 10
0
votes
1
reply
1.6k
views
Efficient coverage calculation with RleList and GRanges
granges
Rle
coverage
View
mean
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
Christian Ruckert
▴ 170
6
votes
3
replies
2.4k
views
how does coverage() works
biostrings
coverage
rle
iranges
7.9 years ago
likeeatingpizza
▴ 10
0
votes
1
reply
1.4k
views
extract RLE normalized table
rle
normalization
table
updated 8.5 years ago by
Steve Lianoglou
★ 13k • written 8.5 years ago by
aiko
• 0
3
votes
7
replies
2.0k
views
Add up RLEs that are in lists?
RLE
GenomicFeatures
rnaseq
updated 9.0 years ago by
Hervé Pagès
16k • written 9.0 years ago by
gen
▴ 30
2
votes
6
replies
2.8k
views
Shrink or Expand RLE
RLE
iranges
granges
coverage
updated 9.0 years ago by
Martin Morgan
25k • written 9.1 years ago by
gen
▴ 30
2
votes
4
replies
1.8k
views
summing integer RLE
rle
list
irange
grangeslist
updated 9.1 years ago by
Chris Seidel
▴ 80 • written 9.1 years ago by
gen
▴ 30
1
vote
2
replies
1.1k
views
Summary statistics of RleListViews object
rle
Views
9.2 years ago
Sean Davis
21k
2
votes
5
replies
1.4k
views
making a RleViewsList object gets slow with many chromosomes
views
iranges
rle
9.2 years ago
Janet Young
▴ 740
1
vote
1
reply
2.2k
views
Computing NUSE and RLE scores
affyPLM
RLE
NUSE
updated 9.2 years ago by
Sean Davis
21k • written 9.2 years ago by
beverly893
▴ 10
0
votes
2
replies
1.1k
views
boxplot on an Rle object?
Rle
boxplot
9.2 years ago
Johannes Rainer
★ 2.0k
20 results • Page
1 of 1
Recent ...
Replies
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
Comment: Estimating Cell Counts for EPIC V2 array data
by
normawiedman059
• 0
0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Awards
• All
Popular Question
to
shepherl
3.8k
Popular Question
to
BioinfGuru
▴ 20
Popular Question
to
Gordon Smyth
50k
Scholar
to
Peter Hickey
▴ 740
Popular Question
to
sropri
• 0
Locations
• All
UPF, Barcelona, Spain,
4 minutes ago
Netherlands,
6 minutes ago
France,
8 minutes ago
United States,
9 minutes ago
Egypt,
10 minutes ago
Traffic: 813 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6