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genomicranges biocgenerics rlelist genomicvars iranges

updated 6.6 years ago by Hervé Pagès 16k • written 6.6 years ago by Devin King ▴ 20

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rlelist ifelse

updated 7.3 years ago by theobroma22 ▴ 10 • written 7.3 years ago by maltethodberg ▴ 170

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bug genomicranges granges rlelist coverage

updated 6.2 years ago by Hervé Pagès 16k • written 6.2 years ago by xiaotong.yao23 ▴ 10

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Views genomicalignments IRangesList coverage RleList

updated 7.7 years ago by Hervé Pagès 16k • written 7.8 years ago by ccanchaya • 0

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delayedarray rlelist rle

updated 6.5 years ago by Peter Hickey ▴ 740 • written 6.5 years ago by davide risso ▴ 950

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Views IRanges GRanges RleList

updated 2.5 years ago by Mike Smith ★ 6.5k • written 2.5 years ago by Assa Yeroslaviz ★ 1.5k

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iranges s4vectors rle rlelist

5.8 years ago endrebak85 ▴ 40

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Install/Switch between multiple versions of R, Rstudio, and Bioconductor

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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