Bioconductor Rlelist

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912

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Views IRanges GRanges RleList

updated 2.5 years ago by Mike Smith ★ 6.5k • written 2.5 years ago by Assa Yeroslaviz ★ 1.5k

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958

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iranges s4vectors rle rlelist

5.8 years ago endrebak85 ▴ 40

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1.9k

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bug genomicranges granges rlelist coverage

updated 6.2 years ago by Hervé Pagès 16k • written 6.2 years ago by xiaotong.yao23 ▴ 10

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1.6k

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delayedarray rlelist rle

updated 6.5 years ago by Peter Hickey ▴ 740 • written 6.5 years ago by davide risso ▴ 950

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1.5k

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genomicranges biocgenerics rlelist genomicvars iranges

updated 6.6 years ago by Hervé Pagès 16k • written 6.6 years ago by Devin King ▴ 20

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1000

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rlelist ifelse

updated 7.3 years ago by theobroma22 ▴ 10 • written 7.3 years ago by maltethodberg ▴ 170

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1.3k

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Views genomicalignments IRangesList coverage RleList

updated 7.8 years ago by Hervé Pagès 16k • written 7.8 years ago by ccanchaya • 0

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Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Votes

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

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