Bioconductor Rlelist

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1.9k

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bug genomicranges granges rlelist coverage

updated 6.2 years ago by Hervé Pagès 16k • written 6.2 years ago by xiaotong.yao23 ▴ 10

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1.6k

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delayedarray rlelist rle

updated 6.5 years ago by Peter Hickey ▴ 740 • written 6.5 years ago by davide risso ▴ 950

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1.5k

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genomicranges biocgenerics rlelist genomicvars iranges

updated 6.6 years ago by Hervé Pagès 16k • written 6.6 years ago by Devin King ▴ 20

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1.3k

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Views genomicalignments IRangesList coverage RleList

updated 7.8 years ago by Hervé Pagès 16k • written 7.8 years ago by ccanchaya • 0

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1000

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rlelist ifelse

updated 7.3 years ago by theobroma22 ▴ 10 • written 7.3 years ago by maltethodberg ▴ 170

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958

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iranges s4vectors rle rlelist

5.8 years ago endrebak85 ▴ 40

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912

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Views IRanges GRanges RleList

updated 2.5 years ago by Mike Smith ★ 6.5k • written 2.5 years ago by Assa Yeroslaviz ★ 1.5k

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Comment: Methylation Analysis experiment design using Limma by hortense96 • 0

Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…

Comment: Limma design with continuous and categorical covariates by hortense96 • 0

Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …

Answer: minfi::read.metharray.exp by Basti ▴ 770

Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…

Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0

Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …

Votes

Answer: OrgDb for maize

Answer: DESeq2 - dispersion estimation when there is none

Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

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