Showing : rlog transformation • reset
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Deseq2 rlog or 'regular' normalization?
Deseq2 rlog transformation data visualization
9.3 years ago sunil.mangalam • 0
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3
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7.7k
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What does DESeq2 rlog() return exactly?
deseq2 rlog rlog transformation
8.9 years ago lanhuong ▴ 20
2
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2
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3.6k
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DESeq2 transformation to use for PCA plot
deseq2 pca rlog transformation variancestabilizingtransformation
8.7 years ago Shobana Sekar ▴ 20
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4
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1.5k
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rlog fast=TRUE not correct?
deseq2 rlog transformation vst
8.6 years ago ldetorrente ▴ 10
2
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4
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3.5k
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DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2 plotPCA rlog transformation vsd
7.5 years ago Jane Merlevede ▴ 90
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2
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DESEq2 Principal Component Analysis with different genes biotypes (protein coding, miRNAs, lncRNAs, etc)
DESeq2 PCA rlog transformation biotype
6.7 years ago JoannaF ▴ 10
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3
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3.7k
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Data normalization and transformation using DESeq2
deseq2 normalization rnaseq rlog transformation variancestabilizingtransformation
6.1 years ago chiara.facciotto • 0
0
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3
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1.8k
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rlog transformation using DESeq2
rlog transformation deseq2
updated 8.2 years ago by 43k • written 8.2 years ago by ▴ 60
1
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1
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780
views
deseq2 rlog trasformation
deseq2 rlog transformation
updated 8.2 years ago by 43k • written 8.2 years ago by ▴ 40
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2
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5.5k
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DESeq2: how to interpret the heatmap clustering samples
deseq2 rlog transformation heatmap scale
7.8 years ago lina.faller ▴ 10
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3
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1.5k
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Variance estimation with DESeq2 and rLog transformation.
deseq2 rlog transformation
updated 8.5 years ago by ★ 13k • written 8.5 years ago by • 0
4
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7
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4.8k
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DESeq2 for survival analysis
deseq2 survival rlog transformation
7.1 years ago array chip ▴ 420
2
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2
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5.2k
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choosing the normalization method (rlog, variance stabilizing transformation)
variancestabilizingtransformation rlog transformation deseq2
updated 14 months ago by • 0 • written 7.1 years ago by ▴ 80
1
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1
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2.0k
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sample removal after clustering
deseq2 rlog transformation
updated 7.0 years ago by 43k • written 7.0 years ago by • 0
6
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6
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8.5k
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DEseq2: Is vst/rlog transformation applied to raw counts or normalised counts?
deseq2 vst rlog transformation
updated 6.0 years ago by ★ 13k • written 6.0 years ago by ▴ 20
2
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2
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1.3k
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rlog transformation for Time-course data
deseq2 rlog transformation timecourse rnaseq
updated 8.2 years ago by 43k • written 8.2 years ago by • 0
2
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3
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1.6k
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Better to use rlog or vst transformation for data quality assessment of differental expression data based on size factors?
DESeq2 quality assesment vst rlog transformation
updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 10
1
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1
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844
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deseq2: use blind=T or blind=F when find gene groups?
rlog transformation deseq2
updated 6.0 years ago by 43k • written 6.0 years ago by ▴ 20
6
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4
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4.2k
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regularized log transformation- loss of zero values for sparsely expressed genes
deseq2 rlog transformation vst variancestabilizingtransformation rlog
updated 8.4 years ago by 43k • written 8.4 years ago by • 0
0
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15
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3.2k
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rlog not found
rlog rlog transformation
6.7 years ago crowsreign42 • 0
20 results • Page 1 of 1
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Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Michael Love 43k
hi, for questions about what statistical analysis approach to use, I recommend you work with a local statistician or someone familiar with …
Comment: Problems with oarfish + tximport + swish by Michael Love 43k
I'm not certain that this will work with Oarfish, the documentation only mentions Salmon and piscem. I'd use tximport for now.
Answer: Problems with oarfish + tximport + swish by Michael Love 43k
> This is fine Did tximeta() print that a matching transcriptome was found?
Answer: DESeq2 Heatmap by swbarnes2 ★ 1.4k
> However, I've been asked why the first column (vehicle/control) isn't > entirely zero on the log fold change (logFC) expression scale. …
Comment: Biomart and ensembl not working? by James W. MacDonald 67k
``` > library(biomaRt) > mart <- useEnsembl("ensembl","hsapiens_gene_ensembl") Ensembl site unresponsive, trying useast mirror > mart Objec…
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Answer: Limma Interaction Effect with Covariates
Comment: DESeq2 for single cell pseudobulk processing
C: Limma: how to get same output as topTable but for all the genes ?
A: Processing agilent data by limma
A: Linear regression in DESeq2
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