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rmarkdown
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10
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3
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News:
Updates to BiocStyle formatting
BiocStyle
vignettes
rmarkdown
latex
News
6.6 years ago
Andrzej Oleś
▴ 750
6
votes
1
reply
3.1k
views
Tutorial:
BoF "Writing papers in Rmarkdown, BiocStyle... (and books, posters)"
biocstyle
Rmarkdown
Tutorial
6.7 years ago
Wolfgang Huber
★ 13k
3
votes
2
replies
1.6k
views
Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWorkFlowTools
BiocWorkflowTools
rmarkdown
updated 6.8 years ago by
Andrzej Oleś
▴ 750 • written 6.8 years ago by
Leonardo Collado Torres
★ 1.0k
3
votes
3
replies
1.9k
views
Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chunk
rmarkdown
suppressWarning
warning
updated 13 months ago by
Mike Smith
★ 6.5k • written 2.3 years ago by
Wolfgang Huber
★ 13k
3
votes
3
replies
16k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown
rstudio
knitr
7.5 years ago
Jon Bråte
▴ 250
1
vote
2
replies
1.3k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs
DECIPHER
notebook
rmarkdown
updated 4.6 years ago by
Erik Wright
▴ 150 • written 4.6 years ago by
lauren.fitch
• 0
1
vote
1
reply
1.1k
views
Best practices for sharing RMarkdown-based supplemental PDFs?
rmarkdown
knitr
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
Keith Hughitt
▴ 180
1
vote
1
reply
1.1k
views
Having issues mapping gene Ids during ReportingTools::publish() from Bioconductor.
ReportingTools
RNA-Seq
RMarkdown
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
anthony.nash
▴ 20
0
votes
2
replies
3.5k
views
Error in file.choose() : file choice cancelled
package development
bioconductor
rstudio
rmarkdown
vignettes
6.4 years ago
clarisbaby
• 0
0
votes
2
replies
3.4k
views
installation of package 'rmarkdown' had non-zero exit status
rmarkdown
package updates
updated 7.6 years ago by
James W. MacDonald
65k • written 7.6 years ago by
tarek.mohamed
▴ 10
0
votes
0
replies
598
views
Author footnotes in BiocWorkflowTools::f1000_article template
BiocWorkflowTools
rmarkdown
3.8 years ago
helucro
▴ 70
11 results • Page
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Replies
Comment: Minfi - estimatecellscount
by
clacarion
• 0
Thank you for your response, that's what i was thinking I will try with the rgset only and come back to tell you what's happening ! Best…
Answer: Minfi - estimatecellscount
by
James W. MacDonald
65k
Don't filter first. You are likely removing the CpGs that are used to estimate the cell counts.
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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