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rmir
•
reset
0
votes
0
replies
754
views
RmiR and RmiR.Hs.miRNA
miRNA
RmiR
miRNA
RmiR
10.4 years ago
Thomas Hampton
▴ 750
0
votes
0
replies
881
views
BioC package for miRNA target scanning (or displaying results from databases)
miRNA
RmiR
miRNA
RmiR
11.8 years ago
James F.Reid
▴ 10
0
votes
0
replies
868
views
miRNA target prediction algorithm setting used in RmiR.Hs.miRNA package.
miRNA
RmiR
miRNA
RmiR
13.0 years ago
Paul Geeleher
★ 1.3k
0
votes
0
replies
823
views
RmiR: mapping miRNA to probe_id for Affy mogene10st
miRNA
Annotation
RmiR
miRNA
Annotation
RmiR
13.3 years ago
Mary Putt
▴ 100
0
votes
1
reply
875
views
Problem with createAnnObjs.HUMANCHIP_DB
hgug4112a
RmiR
hgug4112a
RmiR
updated 13.9 years ago by
Martin Morgan
25k • written 13.9 years ago by
Wendelin Waunzel
▴ 10
0
votes
0
replies
857
views
pair information of microRNA and Targets prediction
microRNA
RmiR
microRNA
RmiR
14.2 years ago
jrwang@itri.org.tw
▴ 60
6
votes
2
replies
968
views
pair information of microRNA and Targets prediction
microRNA
RmiR
microRNA
RmiR
updated 14.2 years ago by
Laurent Gautier
★ 2.3k • written 14.2 years ago by
jrwang@itri.org.tw
▴ 60
0
votes
0
replies
872
views
Questions on the package "RmiR"
miRNA
hgug4112a
RmiR
miRNA
hgug4112a
RmiR
14.2 years ago
jason0701
▴ 190
8 results • Page
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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